LOC113530431


Basic Information

Item Value
gene id LOC113530431
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16781128 ~ 16782877 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403153.2
GGGTTTTGGAAACCAGTGTTGGCGTGGGGATGATGAAGCGGGAGGCAGGGTTGCGACAACTCTAAAGGGCTTTTATTGTCACTTTTCTTCCTGGCCATGCTTTCCAGCACTTTCTGTCTTATGGTCTCACCCCAAGATACAccaacatatacacacacagtgcagttcAGCTCAGCTGTCTCTCGTGTGGCTCCCATCTCTTCCCTATATCTCCTCGCTGCCATTCACTAAAATCAGAGCCCTCATTTGTCAATCATCATCTATTCATAGTGCCCTCCATTAACAAACTGGCACTCAACTACACCCCCATTGACACAGTGAAATAAGCCTGGTCTACTGACAATTCTTTAAGCATTTTGCTCAAGTtagcaagttttttttctgtgttttaggtTGTGTTCATACGTATACATATAGTCAAATTAACATTGTGTTGGCCTTTCAGCTTTGCTgtgctttattaattattaatttgttaatgcCACTTTCAAATCTTTCTATACATCCCTATACAAACCAGAATCTTCAACTGATAATTAGAGCAATTACTGATTTTTTACAGAATCTCAAGACTTTTACAATtgattcaagattttttaaatttttttaaatagaaacaatcactgcaagttatatactgcatataattgtgtatgtgacaaataaaaaaaaaatcttgaatcagTTGTAAAGCATCTAAACATCTTGATGCCCCTTTAAGTACAGAATAAATTGAATTGTGTCATGGTAGCGGTGAATACTGAGCAGAACTATGATACCCATTAGCCCCTGCACatcacctgaccatgacactcACTATGTCACATGAATGTTCGCACCTGATTCACGTTTATATTTAATGAGCACTGTATTTTAAGCCCTGGTTTTCACATGTTCCattgtctagcttttgtcttttgttgtcATGGGCACCATCTGCCACCTCTGCTACTAAAACCTGACAGAAAGCTAGATCTAaccatggatgcagcagatTTGCTCAAGGGCCAGCAAGAACTCTTGGAGAAGAACTGCCTAATGTGGGAACAACAGGGAACTCAGAGGACGTTGCTACAGCTCATAGCTTCACTATGGGCATCGCCCCATCTCCCTGCTCCACTGAGGACATCACTATGCTGTCCAGCTCCatttcagcatgtgtgtgtctgtcatgGTAGTGGTGAATATGGAACAGAACTATGACACCCATCAGCCCCTGTACatcacctgaccatgacactcACTATGTCACATGAATGTTCACACCTgattcatgtttatgtttaaacagcactgtgtttAAAGCCCTGGTCTTCATATGTTCCATTGTGTAGCTTTTGTCTTCTGATGTTGGGTGCACCCTCTGGTCTATGTACAGTATTTGCCTCGAGATCATAGTTCATGTTTAAGATTCTATGATTtatgttgtttgtgttgttcatgttttgtgttaaaattaactttatttaaagaaatttcaGAAGAAACGGGCACCACTATTTCTGTCAGTACTACCATTACTTCTTTATTCTCCTCTCCTACCATCTCTAAATATTGAAATTGCTATATAACTACACGTACATATGAATATATTTCTGGACAGCTCACATGTAggctcataaaataaaaaaatattagtgcT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403153.2 True 1642 lncRNA 0.39 2 16781128 16782877

Neighbor

gene id symbol gene type direction distance location
cs cs,LOC107707042,LOC107671863,LOC107697968 coding downstream 18435 16708190 ~ 16762693 (-)
si:ch211-207e14.4 LOC108276234 coding downstream 133427 16641460 ~ 16647701 (-)
sars1 sars,LOC107697960,LOC107671868 coding downstream 193380 16574026 ~ 16587748 (-)
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding downstream 1128523 15608285 ~ 15652605 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding downstream 1220014 15455518 ~ 15561114 (-)
rapgef3 LOC108275659,LOC108425525 coding upstream 342142 17125019 ~ 17171019 (-)
LOC113530577 NA coding upstream 426008 17208885 ~ 17226734 (-)
LOC113530575 NA coding upstream 947835 17730712 ~ 17735744 (-)
taf8 taf8,LOC107594013,LOC107671856,LOC107723763,LOC107549030 coding upstream 964405 17747282 ~ 17754344 (-)
g0s2 g0s2 coding upstream 972715 17755592 ~ 17756555 (-)
G256162 NA non-coding downstream 143403 16636888 ~ 16637725 (-)
G256160 NA non-coding downstream 148680 16631392 ~ 16632448 (-)
G256166 NA non-coding downstream 151611 16628981 ~ 16629517 (-)
G256164 NA non-coding downstream 154511 16626242 ~ 16626617 (-)
G256163 NA non-coding downstream 156356 16624466 ~ 16624772 (-)
G256197 NA non-coding upstream 10040 16792917 ~ 16793280 (-)
G256199 NA non-coding upstream 11567 16794444 ~ 16794769 (-)
G256212 NA non-coding upstream 46338 16829215 ~ 16829435 (-)
G256208 NA non-coding upstream 68856 16851733 ~ 16852672 (-)
G256223 NA non-coding upstream 91685 16874562 ~ 16874767 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other downstream 86097 16647823 ~ 16695031 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 960887 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 1463763 15258485 ~ 15317365 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 2076858 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 2630547 14128963 ~ 14150581 (-)
si:ch211-210c8.6 NA other upstream 4924 16787801 ~ 16838649 (-)
dazap2 dazap2 other upstream 70051 16852928 ~ 16871164 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 1101366 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 1502609 18285486 ~ 18300687 (-)
LOC113530839 LOC108275928,LOC108425553 other upstream 1726271 18509148 ~ 18531252 (-)

Expression


Co-expression Network