LOC113530849


Basic Information

Item Value
gene id LOC113530849
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24705287 ~ 24706115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403185.2
caaacacacacacacacacacacacaccgctcgcGCGACGGCGTTTGTAATGTAAACGGGTGAGACACGAATCACAGTTGAACAGGAGATACGCTGGTCTGTAAATCCTGGCCTGAAGAAATGTGATATGGAGCAGCAGGAGGACGTCTGGAGCAGTCTGGACGGTCCAGCAGCACAGCGAGGTTGTGGATCTGAAATATACTGAAACCTGTCGGGTTTAAAACAATAACCTACTCAAACTGAAACACCACGatacaaacactaacacactcctcAGCACGGTGGTGTTTGGATTTGAATGTGcttgtatttgatttttttgtgtgtgtgtgtgtgaaatttgtgCTGGGGTTTCGGCTAGGAAATGCTGAGAATATTTGAAATCAAACACTAGTTTCTTTAACCCCAAAACAGCACATATTCAAGATAAAACACCAAACATGCTTAAAACAGAAAActatcacatttacacacaaacaccgacacatttacacacaaacaccaacacatttacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403185.2 True 519 lncRNA 0.43 3 24705287 24706115

Neighbor

gene id symbol gene type direction distance location
aimp1b LOC108275725 coding upstream 6854 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 15392 24680620 ~ 24689895 (+)
LOC113530697 NA coding upstream 81482 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 92198 24599158 ~ 24613089 (+)
LOC113530532 LOC108275719 coding upstream 176372 24520879 ~ 24528915 (+)
sgms2b LOC108275722 coding downstream 8902 24715017 ~ 24725235 (+)
LOC117599303 NA coding downstream 91114 24797229 ~ 24801608 (+)
LOC117599304 LOC108275642 coding downstream 95777 24801892 ~ 24802529 (+)
LOC117599305 NA coding downstream 97056 24803171 ~ 24804413 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 101402 24807517 ~ 24826683 (+)
G260677 NA non-coding upstream 88070 24616168 ~ 24617217 (+)
G260623 tcp1 non-coding upstream 101228 24528252 ~ 24604059 (+)
LOC117599259 NA non-coding upstream 176372 24523258 ~ 24528915 (+)
G260632 LOC108275555 non-coding upstream 225487 24477566 ~ 24479800 (+)
G260592 NA non-coding upstream 274596 24405044 ~ 24430691 (+)
G260691 NA non-coding downstream 19732 24725847 ~ 24728397 (+)
LOC117599308 NA non-coding downstream 29608 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 39666 24745781 ~ 24751808 (+)
G260664 NA non-coding downstream 62807 24768922 ~ 24771134 (+)
G260705 NA non-coding downstream 68400 24774515 ~ 24775224 (+)
ddx58 ddx58 other upstream 69158 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 251749 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 436020 24268577 ~ 24269267 (+)
G260415 NA other upstream 672563 24032227 ~ 24032724 (+)
G259993 NA other upstream 1315973 23387538 ~ 23389314 (+)

Expression


Co-expression Network