LOC113530885


Basic Information

Item Value
gene id LOC113530885
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17317638 ~ 17320983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403190.2
ACTGCTGCTGAAATACAACAACCATCAAACACTGGAGGCAGTGGCCTTTCAAAAGAAGAGCTCAACATTACAAAGTCTGTGACTATGTCCAACCCAGAATACATAGTCTACACAGACAGTTAGCTTGAACAGGCGCGACCCTCCTACTTCAAGCAGAAATGGCTGGGGACAGAGCACATTGTGGCCTTATCCAAGGAGCTCTTCTGCTGACTCATAAGAAACACTATGACTAAAATGATTACAATTGCAAAAGCCACAGAGGACTCCAGATACCCCAGCAAACATGAGGTCAAAGTGATTGGTGGAGTACTACCCAGTGATGAAAGACAGGTCATCAAACATTGAGTGGctTATGAAGAGAGTCTCAAATGTCAGAAGTCCAAGGAAGGCCAAGGTTCCTCCTTTGAAGGAACCATGAGAGGATGGGGAAATCCATGCAGATGTTGCAACAAGTGACTACAGTGGAGATTCCAGTGCATCACCATTAGTCTGGAGTAATCATCTGTTAGAGCCAGCACCCCAAGCAACACCAGGATAGCAGTGATGAAGCATGTATTTTTAAGGGAGCAAGACCGACAAAGATTCTAGTTGCTTACCCTTGTTTCAGAGATGTGGATCACGTCCCGGATGACCTGCGGAGAATTATTCAACCAAACAATTCCTGGTACATTTGAAGGACAGATGGGAAAGCTTCTACTCAAAGGTCTAGTTTTATAGTGTCATGAAGAAAGCCATATGAAGCCTCCAAAAACTTTGAATGGAGGTGAAGACACAACACCTTGATTTGTCcaagtttatattttgagatCTCATGATGAGTGGGAATTAATGGTACTGCCTTGTATTGTGCCTTTTCTGTTAAACCAGTGGAGCATACCACAGCTGTGTTCAGAGCCCTGCCACTGCACTTCCTATCCAGCACCTTGATGTAGAATTATCATTTGACCATTCAGTGTCAAAGTGTGTATTAGTCCAGGTCaaaatgtgtattatttgtggtgtttttctaatcttgtacaTTCCTATGACAACGACCCCTGTGTTGTCTAGTTGTGCTCGTCTCTGAAGACAACAGCATGATCACCGTTGGAAGCACGCCAGTGACCACACTGCTAATAGTATTGCAAAGGGAAATTCTCCAAGATTCCATCCATGACAGAGATTCAACCCCCACCTACAAAAAAGCCCTTGGTGAGTGGAGTCTCATGTCTGACAAAGTTGTGTTTCAGAAAAAGTTTCAGAAAAAGTCACAAGTCATCAGCCTCACCTCAGGCTACCACCCTCAGTCCAATAGCCAAGTGGAGCGGGCCAGTCAGGAAGTAGGAAGATTTCTACAGTCCTTCCGTGCTTCTAACCAAGAAGATTTGGCCCACTTCCTCCCATGGGCCAAATATGCCCAAAATTCTCTGAGGCATTCAGCCACCCAGTTTACCCCCTTTCCAGTGCATCGTCGGTTACTAAGCTCCCCTATTCCCAAGGACAGTCCTGACAGTCCTCAATGCAAATGAACTTTGCAAAGTATTCGTTCAGCTCTGTTTCTCATCTGACATACCAAGCCTTTGATTCATGTTTACTACTTCTGGTTTTGACCcacttttttctcatttcatgaTTATAGTCTCATCTTCTGAATACCTGTTAGTACATCGCATAACCCTTTGCCTGATTCTGGATTCTGGCCTTGACAGAATCcagtctttatttttaataaaagcatttgcCACAATTGTCGCTGTATCTGCCGCATAACAGAACAACCAGAAGACAAACCTTTAAGATATTGTACTATATTTTATAAtcttataaattataatataaatttataattgtatattttataaaagtcaACACTGTGTCTAAATATGACGAATATTAAAAGCCACACATTGATGAACTGCTTGAACAGATATGCATGGCTCACTTTTATTCGACACTGAATTTAACCAAGGCgtattggcagattcccttgactCAAATAACCTTAAAAATGGCTTTTTCCACTCTGTTTAggttacaccaatttgtcaccctTCTGTTCTCATGGACAAAATACTCTCATGGACAAAATACTCCACATGCACAGTACATATGCTTCTCCGTATTTAGATGATGTAgtcatttatagtaatgattggcagcggCATTTACAACATCTAAGAGCTGTCCTAAAATCCTTGAGATGAGCaggactcacagcaaacccaaagaagtgtgcagtTGGACAGGTGGAAGTAAGGTATCTGagcttccacttgggccatgggctGGTGTGTCTGCCCAAACAGGCTAAAAGCTATAAgaattctataataaatataatagcttGAATAATGGTGTGTTGTGACTGACTTCCCCCactatactaaaaataaaatcatggcTATGCTTAATGGACCCACTTTGAGGAAGACTACTCAAGGAAACGTAAATCATTACCTGGTTGTCTACTGAAACTTGATTAGCTTTAATGAAATCTGTAAACCTGaacctgaaaaacacaaaccacTGTGGGAAAGATTGCCCAGTAATGGTTAAACAGGTTTCTAAAATGATATATAGTGAGCTTAATTTTAAAATCCAAGAAAGGCACATTGCAAACAGTGAGAAATTCAGGCATTACATGCAGCGCATGGACAGATGCTAATTGGCCCACAGCTTCTCTCTTAGAATGGATGATAGGTGGCCCACTGGCCTGCATGTTgcaattttttcttttaccttATGGTGGTAGCACACTGTGTTAACACATATAGCTAAATTGCAAGAGCCTTTTTTCTCTGACACCTGCAAATTAATGTACTGTATGATATTTAGTCATGGCTACAGACAAATGCACAAAGTTAACAGTGAGAAGGGGTGATTTCAAATGTGTGTGCCTCATATGTCAAGAGACTGTTGCAGTAATTGAGGAATTTAATATCATGAAAcattatgaaacaaatcatgggtgatgcaaaaaatattcagaagaTGAGAGGGCAGCTGAAAGCtaaggtccataagtatttggacagtgacatgaTATTTGTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403190.2 True 3033 lncRNA 0.41 3 17317638 17320983

Neighbor

gene id symbol gene type direction distance location
LOC113530577 NA coding downstream 90904 17208885 ~ 17226734 (-)
rapgef3 LOC108275659,LOC108425525 coding downstream 146619 17125019 ~ 17171019 (-)
cs cs,LOC107707042,LOC107671863,LOC107697968 coding downstream 554945 16708190 ~ 16762693 (-)
si:ch211-207e14.4 LOC108276234 coding downstream 669937 16641460 ~ 16647701 (-)
sars1 sars,LOC107697960,LOC107671868 coding downstream 729890 16574026 ~ 16587748 (-)
LOC113530575 NA coding upstream 409729 17730712 ~ 17735744 (-)
taf8 taf8,LOC107594013,LOC107671856,LOC107723763,LOC107549030 coding upstream 426299 17747282 ~ 17754344 (-)
g0s2 g0s2 coding upstream 434609 17755592 ~ 17756555 (-)
camk1gb camk1g,LOC108425536,LOC107590467 coding upstream 445226 17766209 ~ 17778850 (-)
mical1 LOC108276121 coding upstream 470397 17791380 ~ 17827959 (-)
G256413 NA non-coding downstream 76769 17214844 ~ 17240869 (-)
G256403 NA non-coding downstream 124566 17191099 ~ 17193072 (-)
G256393 NA non-coding downstream 140408 17175684 ~ 17177230 (-)
G256368 NA non-coding downstream 211270 17103732 ~ 17106368 (-)
G256313 NA non-coding downstream 268639 17048652 ~ 17048999 (-)
LOC113530886 NA non-coding upstream 439 17321422 ~ 17323140 (-)
G256567 LOC108441107,LOC106572068 non-coding upstream 302202 17623185 ~ 17623422 (-)
G256569 NA non-coding upstream 305336 17626319 ~ 17628461 (-)
LOC117599248 NA non-coding upstream 345685 17666668 ~ 17669629 (-)
G256578 NA non-coding upstream 352296 17673279 ~ 17676261 (-)
dazap2 dazap2 other downstream 446474 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 478989 16787801 ~ 16838649 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other downstream 622607 16647823 ~ 16695031 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 1497397 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 2000273 15258485 ~ 15317365 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 563260 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 964503 18285486 ~ 18300687 (-)
LOC113530839 LOC108275928,LOC108425553 other upstream 1188165 18509148 ~ 18531252 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 1615594 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 2049704 19370687 ~ 19387041 (-)

Expression


Co-expression Network