LOC113530895


Basic Information

Item Value
gene id LOC113530895
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11037822 ~ 11038968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403192.2
AAGCAGCTGTAACTCTAACacgacaaaaaaaacccacaccaTACCTTTAACTTACTTACTTTAAAATATACACTAAAGAAGTGTGTTCAAGTTTGACTGCATATTTCTAAGCATGTCTTGAAAGCATCTTTGAGTACATTgtaaacattgttgtttatgtAATGTAAGAGGCGAGAACTCTGATATGAAGTATATTCAGTGCACTGAACTGTGCATTCATTCTGCATGGATGTAATACAATGCACAGGGTGCAGCTTAAGCAAGGGATATTTTCAGTTTCAAAGCAAATATAGGCCAGAGTGTTCCTCAGTGTCCTCACTCTGCAGAGAGCTTATGTGCCTGATCCAGAGTGGCACCGATGAGCAGGGACTGAGAGTCCTACAACCCAGGAATTCATGAATCCTTAATGTCCTCGCTCGATCACGCTCCCCGCAGCGTGTGGAGGCTGTGTTTGCCGAGCTATTACAGCTGACTCATGCAGGATACGTGCAGCCTTGTTTTTCTGAATTCCCGTCACTGATTGAATTGATATCTCCCTAAAATCACCATTTATGGTGCAAGGTCTGGAGTGTGCAAGATGAggtcatgtctttttttaagcACTCAGTAGGACAGCCTGATTCTGTGCAACCCATTTCGAGGAGAATTCCTACTTTTAGGTCCTGTGCAGCTCTCTGGCAGCAGCTTGGAAACCAAAAAGAGGCAATCCACCCTTAATAGAGACAAGGGCCCTAGTTTAGAAGTGAGATGATGACTTCAGTTTTTTAGGGTAAATCTATTTTGGGTTAACTTATTAATTCATGGAATAGGCCCATTTACCCACCTCAGGGGAAATTATCTTACACTTCATTCTGATCTAAATTTAACCTGTGGCCAGTCTGAGTGTGATCTCTGGAAGAGGACAGAAATGCCAGGTAATGTATGAAGATAAAAATGATTATGATAGCCAAATTTGACAACGGTAAGGATGCTGTCTCTTTGTCCTTTGTTAGCGCAATGAAATAATTATCTGATGGgattgctttatttaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403192.2 True 1054 lncRNA 0.40 2 11037822 11038968

Neighbor

gene id symbol gene type direction distance location
kctd6b kctd6b,kctd6,LOC108436290,LOC107671957,LOC107737715,LOC107570288,LOC103028649 coding downstream 18107 11016816 ~ 11019715 (-)
dnase1l1 LOC108275786 coding downstream 33226 10999100 ~ 11004596 (-)
flna flna,LOC101154674,LOC108436314,LOC107712729 coding downstream 64047 10942875 ~ 10973775 (-)
emd LOC108275784 coding downstream 96570 10932106 ~ 10941252 (-)
cfap126 LOC108276287,LOC108276289 coding downstream 180860 10853017 ~ 10856962 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding upstream 4295 11043263 ~ 11049735 (-)
LOC113530590 LOC108275622 coding upstream 75311 11114279 ~ 11115673 (-)
apobec2b apobec2,apobec2b,LOC108276433,LOC107657013,LOC107712740,LOC107737624 coding upstream 199284 11238252 ~ 11242304 (-)
si:dkey-109j17.5 LOC108276432,LOC108436326,LOC103033727 coding upstream 208684 11247652 ~ 11254606 (-)
ccdc115 ccdc115 coding upstream 217096 11256064 ~ 11258687 (-)
G252969 NA non-coding downstream 31205 11005952 ~ 11006617 (-)
G252967 NA non-coding downstream 40386 10994816 ~ 10997436 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 125357 10904886 ~ 10912465 (-)
G252921 NA non-coding downstream 171126 10866236 ~ 10866696 (-)
G252920 NA non-coding downstream 172122 10865360 ~ 10865700 (-)
LOC113530615 fam208a non-coding upstream 50097 11089065 ~ 11091335 (-)
G253174 NA non-coding upstream 225941 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 314534 11353502 ~ 11354217 (-)
G253385 NA non-coding upstream 320547 11359515 ~ 11361585 (-)
G253384 NA non-coding upstream 324004 11362972 ~ 11364414 (-)
abhd6b LOC108275644,LOC108436291 other downstream 12813 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 22156 11009463 ~ 11015666 (-)
sinup NA other downstream 399104 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 568026 10460694 ~ 10469796 (-)
G252373 NA other downstream 1007829 10029492 ~ 10029993 (-)
LOC113530309 NA other upstream 417052 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 510426 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 799828 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 1116760 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1858506 12897474 ~ 12934308 (-)

Expression


Co-expression Network