LOC113530992


Basic Information

Item Value
gene id LOC113530992
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11892348 ~ 11892420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403206.1
GTTCTGTGATGATTCAACAGCATGACTTTCGTTCTTCTGAGTCTGCTGAAGCCAAATATCTGTTCTGAGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403206.1 True 73 ncRNA 0.41 1 11892348 11892420

Neighbor

gene id symbol gene type direction distance location
LOC113530663 LOC108275530,LOC108435244,LOC107560901,LOC107671993 coding downstream 322 11884544 ~ 11892026 (-)
nfascb LOC108276480,LOC108435243,LOC107737654,LOC107672057,LOC107741310 coding downstream 8325 11863151 ~ 11884023 (-)
LOC113530815 LOC108276064,LOC108276065,LOC108276066,LOC108275619 coding downstream 41905 11821848 ~ 11850443 (-)
LOC113530817 LOC108276066,LOC108276064,LOC108276065,LOC108275619 coding downstream 58153 11829275 ~ 11834195 (-)
uba3 uba3,LOC108435248 coding downstream 150589 11729001 ~ 11741759 (-)
LOC113530993 NA coding upstream 507 11892927 ~ 11893002 (-)
prim1 prim1,LOC107741309 coding upstream 15506 11907926 ~ 11915984 (-)
rnd1a rnd1a,LOC108275558,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding upstream 34486 11926906 ~ 11932495 (-)
slc17a9b slc17a9,slc17a9b,LOC107563661,LOC107560897,LOC106566596 coding upstream 176169 12068589 ~ 12083533 (-)
gid8b gid8b,gid8,LOC108276161,LOC107560896,LOC108231957,LOC107391203,LOC105906441 coding upstream 191565 12083985 ~ 12087721 (-)
G253509 NA non-coding downstream 114415 11777718 ~ 11777933 (-)
G253492 NA non-coding downstream 134418 11755205 ~ 11757930 (-)
G253499 NA non-coding downstream 148190 11743950 ~ 11744158 (-)
G253494 NA non-coding downstream 177595 11712997 ~ 11714753 (-)
G253433 NA non-coding downstream 271953 11613240 ~ 11620395 (-)
G253538 NA non-coding upstream 11857 11904277 ~ 11904686 (-)
LOC113530483 NA non-coding upstream 251213 12143633 ~ 12150945 (-)
G253749 NA non-coding upstream 325004 12217424 ~ 12217744 (-)
G253843 NA non-coding upstream 499943 12392363 ~ 12393653 (-)
LOC113530910 NA non-coding upstream 714121 12606541 ~ 12607682 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 33002 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 323745 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 429642 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 867339 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 876682 11009463 ~ 11015666 (-)
ptk6b LOC108276246 other upstream 263308 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1005054 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 1358720 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 2236543 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2806852 14699272 ~ 14704270 (-)

Expression


Co-expression Network