LOC117599220


Basic Information

Item Value
gene id LOC117599220
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13721284 ~ 13722885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579672.1
CCGCGGTGCATGGGGCTGCCGTAATGATGACTCGGGAAGACAAACACCAACTTCACCGAAAAGTCGCGTGCTCACTGACACAGCTCGCGCGTTTCTGTAGGAAGCGGACATTACTGGCTCTTAAAGCACTCACTACAACCGCTTTTTGTTCAGAAAGACTCCTGAGTGCCTGCTAGCATCGGAACACATCCACAACACAAGAGCAGCAAGGAAGACTAAGACTTAACAGTTCACAGGAAATAAACCTCTATCAACTGATTTTGAAGTGGGAGGTGCTCTGAAAGTTAACCATGTCAACCCCATTAAAGATGGAGCTGCCTCTGACATGGCAGAACGAACGGAGG

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579672.1 True 344 lncRNA 0.49 2 13721284 13722885

Neighbor

gene id symbol gene type direction distance location
cables2b cables2,LOC107726996,LOC103130974,LOC107666605,LOC103370114 coding upstream 99423 13590465 ~ 13621861 (+)
ccm2l ccm2l,LOC107666505 coding upstream 133543 13574516 ~ 13587741 (+)
xkr7 xkr7,LOC108435212 coding upstream 149983 13509588 ~ 13571301 (+)
sox18 sox18,sox17,LOC103367850,LOC103467917,LOC103385144,LOC108436137,LOC104941087,LOC107736623 coding upstream 232773 13466509 ~ 13488511 (+)
rgs19 rgs19,LOC108275976,LOC107727031,LOC107666537 coding upstream 290403 13386896 ~ 13430881 (+)
snx21 snx21 coding downstream 338823 14061708 ~ 14067419 (+)
phactr3a LOC108276101,LOC108438212,LOC107696979,LOC107705714 coding downstream 364190 14087075 ~ 14120704 (+)
fam217b LOC108276482 coding downstream 434289 14157174 ~ 14161605 (+)
si:dkey-178k16.1 LOC108276489,LOC108438207 coding downstream 481961 14204846 ~ 14264181 (+)
cntn3a.2 cntn3a.2,LOC108275552,LOC108438229,LOC107727029,LOC107681399,LOC107705655 coding downstream 641528 14364413 ~ 14440337 (+)
G254404 NA non-coding upstream 107044 13613947 ~ 13614240 (+)
G254403 NA non-coding upstream 107747 13613338 ~ 13613537 (+)
G254287 NA non-coding upstream 213501 13507551 ~ 13507783 (+)
G254123 NA non-coding upstream 728072 12993002 ~ 12993212 (+)
G254006 NA non-coding upstream 786983 12933229 ~ 12934301 (+)
LOC113530938 NA non-coding downstream 480 13723365 ~ 13727382 (+)
G254472 sulf2 non-coding downstream 104799 13827684 ~ 13832691 (+)
G254633 NA non-coding downstream 309231 14032116 ~ 14032333 (+)
G254644 NA non-coding downstream 332331 14055216 ~ 14055962 (+)
G254653 NA non-coding downstream 345374 14068259 ~ 14068463 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 751275 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 866904 12837051 ~ 12854380 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other upstream 1335288 12366613 ~ 12385996 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other upstream 1577757 12141472 ~ 12143527 (+)
trim101 LOC108276180 other upstream 1599912 12113622 ~ 12121372 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other downstream 347343 14070228 ~ 14072216 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other downstream 899432 14622317 ~ 14673952 (+)
rps21 rps21,LOC107666483 other downstream 1394185 15117070 ~ 15167668 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 2487205 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 2509128 16232013 ~ 16326614 (+)

Expression


Co-expression Network