LOC117599221


Basic Information

Item Value
gene id LOC117599221
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21583715 ~ 21586639 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579673.1
GACCTGCTGAGCTGCGCTTTTACCCGACTTTAAGCGAATAGTCTACATTATCCGTCGTAGGGCGACATATGCGTCAATCGTCGTAAGACCCCGTCGTAAGGCGAATGCATCAAATTTCTGTTGATGTTTTAAGATTGTGACTAGAACCACTCAACACATCTGTGACGAAGAGTGCTACTTCATCATGGACGCACCGTCACACCTCACTGAGATTATCAGCAGTCTCATTGAGGAACAACAAAGGCAAAATCAGCGTCTGGAGGCCCTGCTACAAGAAGAGGCAAAGACCAAACAGATGCTCCACAGAATCATCCAGCAAGTGGAATCTAAAGATTCCAAGAAAGCTGTCTCGCTATCAGAGCAACATCGCCAGAGGTTTCGCTCCTTGGCCCTCAGTGAGGTCGGCGATCTATTTAAATTTGTACAGCAGCTCCAATTCCACTGTCAGAAGTGGTTGCTGGCTGAGGATTGGGACTGTAGCAGGATTGTGGAGCAGTTGGTAATAGAGCAGTTTATCAAGCAGCTTCCAGAAGAGACTGCCCACTGGGTTCAGCTCCACCAACCAGAAACACCAAATGAGGCCATTCAGTTGGCAGAGAACCACagggcatctctctctctctccccttcaaCATCTGCCTCAGTGGGATGATGCTTTGGGCACACTGTGTGAAGGACCTCCAATCCTGATATTGCTCAACTTCCAGTTTCTTCAATGTCTTCCATC
>XR_004579674.1
CGCCGTGCGACGGATAATTTACGCCATCACACGACggataaataaatttcaaataaatacgTTTCCGCGTCGGAGCACAACCTTTCACTTCTAAAACATTCTTTATTAGTGGAGGTTTTAGTTTCAACTGATAGATCTAAGGTATTTTCAGGTGACCTCTTTGGGGAAAATGTTTCAGTCGGTGGCGGTTCAGTGCGCGCGAGGAAGATTTCATCTGAATTGTAGGAACTGCATTTCATCCGAAAGCGACAGGAAGAGCACAAGAGCCTACAGTATAAGGGAGGCTCCTGCAGCTCTTCTCTCATTTCAGCTCCCTGCTGGTCGGCTGGTGAACTGTGAACACTTAGCGCGGTTGGAAACAAGGCCAACGACCGTCAGAAATTAGCTGGACAGAAGAGTGCTACTTCATCATGGACGCACCGTCACACCTCACTGAGATTATCAGCAGTCTCATTGAGGAACAACAAAGGCAAAATCAGCGTCTGGAGGCCCTGCTACAAGAAGAGGCAAAGACCAAACAGATGCTCCACAGAATCATCCAGCAAGTGGAATCTAAAGATTCCAAGAAAGCTGTCTCGCTATCAGAGCAACATCGCCAGAGGTTTCGCTCCTTGGCCCTCAGTGAGGTCGGCGATCTATTTAAATTTGTACAGCAGCTCCAATTCCACTGTCAGAAGTGGTTGCTGGCTGAGGATTGGGACTGTAGCAGGATTGTGGAGCAGTTGGTAATAGAGCAGTTTATCAAGCAGCTTCCAGAAGAGACTGCCCACTGGGTTCAGCTCCACCAACCAGAAACACCAAATGAGGCCATTCAGTTGGCAGAGAACCACagggcatctctctctctctccccttcaaCATCTGCCTCAGTGGGATGATGCTTTGGGCACACTGTGTGAAGGACCTCCAATCCTGATATTGCTCAACTTCCAGTTTCTTCAATGTCTTCCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579673.1 False 727 lncRNA 0.48 3 21583715 21585880
XR_004579674.1 True 953 lncRNA 0.48 3 21583715 21586639

Neighbor

gene id symbol gene type direction distance location
LOC117599277 NA coding downstream 87660 21494416 ~ 21496055 (-)
LOC117599258 NA coding downstream 108873 21472718 ~ 21474842 (-)
ednrab LOC108276021 coding downstream 279087 21297056 ~ 21304628 (-)
LOC113530756 LOC108276020,LOC108435576,LOC107101953 coding downstream 288942 21287614 ~ 21294773 (-)
wu:fy63c09 NA coding downstream 310704 21259533 ~ 21273011 (-)
LOC113530264 scml2,LOC108275918,LOC107694433,LOC107752426,LOC107564407 coding upstream 41493 21628132 ~ 21671352 (-)
ftr92 NA coding upstream 242626 21829265 ~ 21835197 (-)
gpsm2l LOC108275742,LOC108435558,LOC107754905,LOC107697895 coding upstream 271573 21858212 ~ 21883246 (-)
ghrhrl ghrhr,LOC108275741 coding upstream 298026 21884665 ~ 21921592 (-)
cc2d2a cc2d2a coding upstream 381975 21968614 ~ 21992840 (-)
G258771 NA non-coding downstream 28255 21514647 ~ 21555460 (-)
G258700 NA non-coding downstream 208612 21374898 ~ 21375103 (-)
G258626 NA non-coding downstream 342655 21238036 ~ 21241060 (-)
G258596 NA non-coding downstream 416117 21153906 ~ 21167598 (-)
G258437 NA non-coding downstream 629863 20953626 ~ 20953852 (-)
LOC113530427 NA non-coding upstream 1790 21588429 ~ 21599129 (-)
G258940 NA non-coding upstream 163152 21749791 ~ 21750001 (-)
G258942 NA non-coding upstream 164766 21751405 ~ 21752452 (-)
G258961 NA non-coding upstream 212197 21798836 ~ 21799244 (-)
G258966 NA non-coding upstream 218457 21805096 ~ 21806760 (-)
trnaq-uug_7 NA other downstream 229018 21354439 ~ 21354697 (-)
G258580 map7 other downstream 414017 21168986 ~ 21169698 (-)
camk2n1b camk2n1,LOC107664141 other downstream 607385 20973397 ~ 20976330 (-)
LOC117599256 LOC103359731 other downstream 715711 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 1058251 20518425 ~ 20525464 (-)
fyco1a LOC108275732 other upstream 338605 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 429408 22016047 ~ 22048388 (-)
G259306 LOC108275814,LOC108411446 other upstream 859391 22446030 ~ 22449427 (-)
si:ch73-217n20.1 NA other upstream 1374939 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 1605618 23192257 ~ 23240347 (-)

Expression


Co-expression Network