LOC117599260


Basic Information

Item Value
gene id LOC117599260
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24010675 ~ 24013004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579725.1
TGCTGACGTTGGGGGCGGAGCCTGCATTCATAgggaacacaaacacacacgcttTCCTCTGAAACggaagtgaaagtgaaatcAGAGGGGTTTAAGCAGAGGGAATCGATTAATCGCCTCCAGCTGTAATGGCCGGGAAAAAGAGCAGAGCTGGTGAAAGTCATCAGGACAGATCCTATAAAGATGCTGCTGTCACTAATTTACCCGCAGACTTTAATAAGACTTCGCCTCAGAATCTGAGACTTCAGCAGCTAATTACGTCCCTGACAAAAGTTTTGGCACAGCAGCCGGATGGGATCAGCCTGAACGAAGCTCGCAGGTCCTGTCCTCTTCTCCTCGACCCCGAACTGCTGAAGGATCATCCGTCCGTCCGGCACCTGCTCCTCTCCATGCCAGCGGTCGTGCATCTGCAAGGGTTTGGTGCTCAAACACGCCTCTTTCCTGCTCTCAGAAAAAATAGCTGATGGAAGATTTAACCCCTTTTATGCCAATGATTTTACATCAAATCCTCACTAGGAGTGTCATCAGGAGGTAATATAGGACTATGTAAGTATTAAAACACTCcctgatgtgctgttataggaaaataatcaacgacatggaggtgtgatgaagtggagttactgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579725.1 True 628 lncRNA 0.48 3 24010675 24013004

Neighbor

gene id symbol gene type direction distance location
mcoln3b mcoln3 coding upstream 42789 23951660 ~ 23967886 (+)
syde2 syde2 coding upstream 88699 23888706 ~ 23921976 (+)
c16h1orf52 c15h1orf52 coding upstream 135288 23872817 ~ 23875387 (+)
ddah1 ddah1,LOC107570409,LOC106584046 coding upstream 146237 23809480 ~ 23864438 (+)
znhit6 znhit6 coding upstream 212646 23769235 ~ 23798029 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding downstream 35012 24048016 ~ 24055524 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding downstream 78118 24091122 ~ 24131107 (+)
LOC113530931 LOC108275754 coding downstream 153716 24166720 ~ 24188371 (+)
cltrn tmem27 coding downstream 286592 24299596 ~ 24306661 (+)
mdp1 mdp1 coding downstream 299222 24312226 ~ 24315467 (+)
LOC117599261 NA non-coding upstream 7294 24002549 ~ 24003381 (+)
G260232 NA non-coding upstream 92284 23917881 ~ 23918391 (+)
G260217 NA non-coding upstream 141119 23867651 ~ 23869556 (+)
G260223 NA non-coding upstream 148105 23861642 ~ 23862570 (+)
G260222 NA non-coding upstream 183044 23826892 ~ 23827631 (+)
G260410 NA non-coding downstream 10372 24023376 ~ 24030335 (+)
G260430 NA non-coding downstream 118714 24131718 ~ 24131958 (+)
G260431 NA non-coding downstream 122790 24135794 ~ 24140619 (+)
G260434 NA non-coding downstream 132986 24145990 ~ 24146339 (+)
G260409 NA non-coding downstream 145862 24158866 ~ 24161640 (+)
G259993 NA other upstream 621361 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 627022 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1330133 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2468248 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2771676 21228320 ~ 21238999 (+)
G260415 NA other downstream 19223 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 255573 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 387580 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 611933 24624937 ~ 24636129 (+)

Expression


Co-expression Network