LOC117599266


Basic Information

Item Value
gene id LOC117599266
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20708115 ~ 20711958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579729.1
AACCACGACTGGTTTCATGTGCAGTCTCTTTATGTAATCGATTGGTTGGTAGTACTTTCTTACCTTCATGTGACTCAAGGGGAAGATAACTTCCTGTGATAAACCTGTTTACCAGGGCAGACTTTCCACTCCGCATGCTACCCAGCACACCCTGTATGAAGATATACTTAGATCAACTAAGAGTATTCATTTGTAACAAAAAGACAATTGAAATTCTCCTTCAGAGTTATCAGTATCAGAAGCATgaagcaaaaatattttcttgctCGATAAAATTGACCTAACattgagtttctttttttagtctttAAGATAGTGTTAGCAAGctcataattattttttagcaCAAGAATGTCAGATAAACAAAAAGAACCACAAGAAGAATCACCAGTGTTACAGTGATGATTATAAAGTCATCTTACCAGTCTCAGCTCTGGTATAGAACGATTTAAGGTCCATTCCTGACTGTTAGCACAGGAAGCTGCAGACAGAATAAAAGACATAGACACTGAAACTTACTGAAACAATAAGCATACATGGCATATTTAGTAATAACCTAATGCTCAAAGTTGGCAGGATGTCTGAGTGTACTGAATCCACAACGCAGCATATCTTAAGCAAGTGTACATAAGACCTACATGTTGCGTGTCTTGACGAAAGTCAATTTAAGACACAAATAAGAGTAAGTTAAATTTCACCTTAATTGCAGCCTAAAAACTATTATCCTTTACCCACatgtaataatgtttaaaagaaagCTAATGGATAATGGAAGAACAGATCAAATGATTGCATTCCATTAGAATCCACAGTTTTCTCTAAACATAATGTTCTCTGTTTTCAAATGTCATACAGTTTCAAGATTGGTTAAAATCAGCTCCTGAAATCTGAACTTCGGCATAGGTCTACACTTAATGTAGACTAAGACTGGCTCAGCCCAGCTGTTTCACTGTCACCAGTGACTGATAGAGAATTCTGCTGTCTTCCTTGTGATCAGCTCATCCATGACTGCCCAGCTGTGGCTTGCTATGGACATGTAAAGGGATCCCTGTAGCTTGAGTCTGCATTTGGAGATAATTGTTTTCCTCCGGCCTGACTTGTGGCCCCCTCCACACTTTGCCTGGCCTTTTCCATCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579729.1 True 1138 lncRNA 0.38 3 20708115 20711958

Neighbor

gene id symbol gene type direction distance location
LOC113530407 gpr182,LOC108275868 coding upstream 16501 20689186 ~ 20691614 (+)
LOC113530755 gpr182,LOC108275868 coding upstream 21337 20684365 ~ 20686778 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 28045 20668113 ~ 20680070 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding upstream 42058 20661406 ~ 20666057 (+)
lima1a LOC108275931 coding upstream 97402 20586167 ~ 20610713 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding downstream 7907 20719865 ~ 20729933 (+)
march9 march9,LOC107593952,LOC107599679 coding downstream 25786 20737744 ~ 20751871 (+)
LOC113530777 LOC108276216 coding downstream 171734 20883692 ~ 20886509 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 188164 20900122 ~ 20902771 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 207130 20919088 ~ 20953971 (+)
LOC117599265 NA non-coding upstream 8447 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 27177 20663682 ~ 20680938 (+)
G258162 NA non-coding upstream 51048 20611541 ~ 20657067 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding upstream 131326 20567790 ~ 20576789 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 321302 20369995 ~ 20386813 (+)
G258362 NA non-coding downstream 74284 20786242 ~ 20790145 (+)
LOC117599282 NA non-coding downstream 196858 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 263940 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 373424 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 381371 21093329 ~ 21093844 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 193920 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 309401 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1003052 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1229220 19478302 ~ 19478895 (+)
pkig NA other upstream 1485556 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 191147 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 516362 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 826087 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1959440 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2659786 23371744 ~ 23383653 (+)

Expression


Co-expression Network