LOC117599281


Basic Information

Item Value
gene id LOC117599281
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9704915 ~ 9708803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579742.1
TGGATGCTTCAACATGCAGCAGCTCAAATACAGCACTTCAGCATCCTAGGCCACACCTGAAGCAGCTTTTTGTAGTGAAGGCGAAGAAGGGCAATTGTATCATTATGTTATGTCAACTTTGCCTGCCTAGACCAGTTGAAATATCGGTATTCAAGAGTTCTtcctctaattaaaaaaaaaacacatcgaGagaaaacatCCATCGAAATTAAAGTAGTACAATGAATGTGTcttgaaaagaaaaacctcAGAAGAACAGTGGTGTAATTCAGCTGTGAAAAAGATGAAGATTAAAGACTACTCCATGTCATGCAGGCAGGTTACTCAGTCCACAATTGACAGGTTTGTAGCTGAGTTTGTCTGTGAAAGCCTTCAGCCATTAACCATAGTTGAACTTCCAACATTCATAAATCTAATCCATACAATGCAACCTAGCTGTACAGTTATGTCCCGACCAACTGTGAAGTTGGGAATCGAGGAAGCAGCTgcaaaggtaaaaaaaacattattgctGAAATGGCAAAAGTCAGCTCTATAGGTACCACTACTGATTGTTGGACAGCTCGACAACGGAGTTACATCAGTGTAACCGCAAACTGGATCAATGAATCTACACTGGAAAGAAGGTCTGCTTCGATTGCCTTTAGACGCTTGAAAGGATCCATACGTTTGATTTGCTTGCAGCGGCCCTGGATGACATCCACTCGGAATATGGCATCTCAGGAAAAATAGTCAGAACAACAACTGATAGTGGATCaaattttattaaagcatttaagGTGTATGGTGAACAGAGTCAGCAAGAGTTGATTGGTGCTGACTCTGCTGAggcagtgacactggagagtgagGGAGATGCAGAACGAGTTGAGGTTCAGGACACCTGTTCTATTTTAAACACTAACAGTGGGTTGGAGTATCATCTACCCAAGCACCAGTGTTGCGTGTGTCATCTTCTTAATTTGGTGGCTACTGTGGATGCTTCCAAGGCAGAGGACAGCAGTGAGGTATATAAGAAGCTTACCCGTTCAACGTTTGTGAAATGCCAGGCATTATACGATAAAACCAGCTGGTCTGCCATCAATGCTGAGATCGTCCAAGAAGAATGTAAGCTGCAGTTCATTCAGCCCAACCACACAAGATGGAATTCGGTGGCAGTGCTGCAGAGAGGGTAATGTGGATCCTAAAGGAGCAGGGAGAAGCATCCCTATGTATGTGCAgcattcaaaatgaaaatgtaagtcTGTTTGCTCAATCTCACATTGTTCAAGTACTCCAATTAGAACATCCTTCAGTCTGAAACAAACACTCAGATGGGGTGGCTGCTTCCCACCATCTACCTTCTTGATTCCAAGCTCAAAAAGATGGAGGCTTCAGTCAGGTATGTCTTCCTCCCGCTTTGGGGAGTTTATGGAAGATCAGGAACTCATCAGTGCTGCAATTCTTCTTCCAAAATTCAAAACGTCATCGACAGACAAGGCCCACATCATAAAAGCAGGTATGGATTACATCATGCATTATCTTGATGCCAGTAAGGGCACCCAGCAAAACGAATCACAACGTGATGCCTCTGACGAGGATGACGTCTTTTCTTCCATTAAGACTGTTCCATCCCCAACTGCATCTGAATTGGATGGATACTTGGCTTGTGCCTCAGAAGAGATGGGACTGCTTCAGTCATTTCCTTCGGTTGAAAAGCTAAGCCTCAAACTGAACACACCCTTGCCTGCCTCTGCAGCATGTGAGCGCCTTTTTAGTTGTGCTGGGCAGCTGTTTATACCTAAACGAGCAAGTCTGGACAGTACAAATTTTGAGAATCAGCTCATTGTAAAACTGAACAGCAAATTCAAAATATAGGCTCGTTGTTGACCCCTACGCTAAAATCGCTGCAAGCCTGCGTTCATGTTCAGAGACTTGTCAGTTAATGCATGTTATATTCACTTCAGTGTAATTTTCTAATTTGTGCTACAGGCTCATctttttatgttaaattgtTAATGTACAATGCTTTGCAACCTTTATTAACCTGCAAGAAGACCTCTACAGAATGGTTGTCATAAATGTTACCTGATTATTGGTTGCTTTATCAAATATTACATGCctggatttacaaaaataaaactgttagagaaatatatatatataaaaatttaaactgAGAAACATCCATAAAAGAGTGACACTGTAAGCTACACTTTTAATTTGCAGGGTATAATgtggattttatatatatataataattacattttttggaAAGTAatagtacttttacttgagtatgCTTTTTCAGTACTCTTTCCACCATTGCTCATGACATAAATTCAGAATACAATCCCTTAACACCTATACATCTAGAGTAGGTCTAAAGTCAAACATCAAGAAGTCTTTGGTGTGTCTACTCATGACAGCTCATGCATTGTTTGTAAATGTGGAGGCTCGTCTTTTCCAAATGGCATGTGGGGGGAGATTTGTTCTCAAAGGTCACATAAGGCGGTACATCTGTCTCAGTGTTAAATGATATCCTTAGAGTGAGGATTgagagcctctctctctctctctctctcagagcaaATGTGCTGACATACAGCTATTGCTGCCCACCATGTCCTCATTCTCCTTCAACTCAGACCTCAATGCCAGCTGCTTTCCCACTCAGagatttttccttcttttccctACTCTGTTGTTTCTCAGAGCTAGATATCTAAAACATGCCATCTTTTACTAGAAGGTCAAAGACTACTAGAATACTGGAGATTCCCTCTAATACAATATTCTTGCCAACAAATCATGTACCATAAAACTACTTCTTATGACATAGTGTACTTTCCCAAAAACTactaatttagtttaatttagcAGTAACTAGCAAAAAGAATCAGGATTGTAATTCTGCTTACTAAATATGAGTCAATATCTTTCTTACCAGTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579742.1 True 2933 lncRNA 0.40 3 9704915 9708803

Neighbor

gene id symbol gene type direction distance location
slc2a1a LOC108276488,LOC108434426,LOC106565867,LOC107703064,LOC107591105 coding downstream 40961 9652431 ~ 9663954 (-)
rap1gap LOC108276112,LOC108434374,LOC107716101 coding downstream 101558 9517287 ~ 9603357 (-)
gpr157 gpr157,LOC108434350 coding downstream 267751 9431703 ~ 9437164 (-)
LOC113530597 LOC108432612,LOC108276125,LOC108236859 coding downstream 280015 9417550 ~ 9424900 (-)
eno1a eno1,LOC108434336,LOC107703060,LOC107591100,LOC107716106,LOC103038459,LOC107593367,LOC107737561 coding downstream 298455 9395118 ~ 9406460 (-)
eif4g3b eif4g3,LOC108434436 coding upstream 20571 9729374 ~ 9765854 (-)
lactbl1a LOC108275962 coding upstream 65680 9774483 ~ 9780995 (-)
dhrs3a dhrs3,dhrs3a,LOC108275517,LOC107703071,LOC107712670,LOC107737702,LOC107593436,LOC107687474 coding upstream 213375 9922178 ~ 9928130 (-)
igsf21b igsf21,LOC108275566,LOC107712688,LOC107593375,LOC107687403,LOC107737570 coding upstream 220465 9929268 ~ 9942531 (-)
arhgef10lb LOC108275881,LOC108434548,LOC107591110,LOC107712685,LOC107703072 coding upstream 236048 9944851 ~ 9982274 (-)
G251963 NA non-coding downstream 206614 9498090 ~ 9498301 (-)
G251955 NA non-coding downstream 215052 9488270 ~ 9489863 (-)
LOC117599283 NA non-coding downstream 252747 9449297 ~ 9452168 (-)
G251924 NA non-coding downstream 265279 9439347 ~ 9439636 (-)
G251922 NA non-coding downstream 266104 9438501 ~ 9438811 (-)
G252265 NA non-coding upstream 138313 9847116 ~ 9849696 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding upstream 186481 9895284 ~ 9895525 (-)
G252331 NA non-coding upstream 208626 9917429 ~ 9920148 (-)
G252479 NA non-coding upstream 346074 10054877 ~ 10056083 (-)
LOC117599207 NA non-coding upstream 470985 10179788 ~ 10181888 (-)
ttll10 ttll10 other downstream 1126315 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2195124 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2296658 7399793 ~ 7408257 (-)
c16h1orf127 c15h1orf127,tardbp,LOC107570713 other downstream 2380969 7249631 ~ 7323946 (-)
rps26 rps26,LOC103039794,LOC108433306,LOC100304575 other downstream 3397042 6304844 ~ 6307873 (-)
LOC117599234 LOC108275963 other upstream 59444 9768247 ~ 9771563 (-)
G252373 NA other upstream 320689 10029492 ~ 10029993 (-)
usp21 LOC108276040,LOC108432659 other upstream 751891 10460694 ~ 10469796 (-)
sinup NA other upstream 927698 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 1300660 11009463 ~ 11015666 (-)

Expression


Co-expression Network