LOC117599282


Basic Information

Item Value
gene id LOC117599282
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20908816 ~ 20911082 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579744.1
AGTCCTCAAAGGTTGCAGAGAAGAGCAGCATCTGACAGTCTTTGGGCAGCTTCCTGTCGTCAGAGCAACAGATCACAAGACTCGattcaagcattcagcAGCGGTGTAAGGATATACACAAAGTGCTCCTGCTCACCTGTGGCCACTTGTTCACTGGGTTGACGTGGCTCAGCATGGCCAGTACGAAGGCGGCGGTTTTCCCCGTGCCGGACTGAGACTGAGCAATCAGGTTCTGAGGTAGAAACGGTGCGCTCACGGTTCTGCCAGCATCATCGGCAGCGCAGTCTCCTGGATTTTTGAAGGTCTGTTGAAGCCCATTCCATAGACTCCCTGCAGCAGCTGAGG

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579744.1 True 345 lncRNA 0.54 3 20908816 20911082

Neighbor

gene id symbol gene type direction distance location
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding upstream 6045 20900122 ~ 20902771 (+)
LOC113530777 LOC108276216 coding upstream 22307 20883692 ~ 20886509 (+)
march9 march9,LOC107593952,LOC107599679 coding upstream 156945 20737744 ~ 20751871 (+)
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 178883 20719865 ~ 20729933 (+)
LOC113530407 gpr182,LOC108275868 coding upstream 217202 20689186 ~ 20691614 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 8006 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 86587 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 141588 21052670 ~ 21056506 (+)
cdaa cda coding downstream 148694 21059776 ~ 21062377 (+)
pink1 pink1 coding downstream 152013 21063095 ~ 21067217 (+)
G258362 NA non-coding upstream 118671 20786242 ~ 20790145 (+)
G258275 LOC108276173 non-coding upstream 152278 20682370 ~ 20756538 (+)
LOC117599266 NA non-coding upstream 196858 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 209148 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 227878 20663682 ~ 20680938 (+)
G258439 NA non-coding downstream 64816 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 174300 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 182247 21093329 ~ 21093844 (+)
G258483 iyd non-coding downstream 192632 21103714 ~ 21105101 (+)
G258462 NA non-coding downstream 196265 21107347 ~ 21108015 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1357 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 394621 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 510102 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1203753 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1429921 19478302 ~ 19478895 (+)
si:ch73-290k24.5 LOC108275473 other downstream 317238 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 626963 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1760316 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2460662 23371744 ~ 23383653 (+)
G259993 NA other downstream 2476456 23387538 ~ 23389314 (+)

Expression


Co-expression Network