LOC117599295


Basic Information

Item Value
gene id LOC117599295
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13464191 ~ 13465215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579752.1
GCATATATGAGGAGAGGTATGTGCTGCCTTGGTGTGTGCTATAGGTAGCGTACCCAACCCTGTGTTGTCACATGACTTAATGTCTGTGCCTCCGCATTGTGGTCTCCTGACTCATTTGCTACTTAGACTGTTGCTGGTATTGAATCTTGATTGTCCGAGGCATTCTTTGGGTTGAGCTTCCTTGTTTTTGCAGTCATAGCTGATAACTGGTGTAGTGGCTGCTTCTTGGCATCAGTGCTGTGCAGATCGCATGCTTCACTCTCTGTCCTGGTATTTTAGCCTGGACGGGTTATTGGCTGGGTTTCTGGCTCTTCACATTGGAAGTTTTCCTCACTGTGAGCACTGCTGTTTTGCCTTTATTCCAGAGTCCCAATAGGGGTCGTGATGACTTTCCGGGTGGTGCCCTGGAAATCGCCGGACTTGGAACAATGAATGAACTTGGGGTTGGGCTGTTTTCTTTGAGTTAGGGACTGGTTTGGTTGTGAAAGACATTGaggatttgtgtttgttttttcccctacatattatttataattttcttttttgtgtttaagtATCAGTTTTTTTGTactctttgtctttttgtcttggAGTGTCTGTGTCGAGCCCCACATGCTCTGAACAGGcgtattattgtgttttattatttttctctctgtcttcattttgttactgtcctgtgtttattctcactagtttgtattttttgtttaccCTGCTTAAAGCAGCACAAAGCAATAAAGTTTTGCTCTTGAAGGTTATCTCTAACTTGCAGTTTAGCTGAGTGCCCCCTAGTGTGGCATCAAGTTCCCTTTATAGTAACCTTTGTTTGTCTTACTGTAGGTGTTGTGCTAAATCACTTCTGATTTGATTTGCTGTGCCTGCGTGTAAGTTTTTGGTGCATTCTGCAATGTATAATAAAGGACTCAAGGTGGTCAGTGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579752.1 True 945 lncRNA 0.42 2 13464191 13465215

Neighbor

gene id symbol gene type direction distance location
tcea2 tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683 coding downstream 12817 13440784 ~ 13451374 (-)
myt1b myt1 coding downstream 435304 12995420 ~ 13028887 (-)
LOC113530792 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232 coding downstream 477054 12975444 ~ 12987137 (-)
slco4a1 slco4a1 coding downstream 809370 12615024 ~ 12654821 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding downstream 891683 12545673 ~ 12572508 (-)
sla2 sla2 coding upstream 160683 13625898 ~ 13632021 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding upstream 170597 13635812 ~ 13699042 (-)
phf20b phf20,LOC107594424 coding upstream 235221 13700436 ~ 13721730 (-)
si:ch211-218g4.2 LOC108275877,LOC108429303,LOC107724193,LOC107696985 coding upstream 267873 13733088 ~ 13813355 (-)
sulf2b sulf2,sulf2b,LOC108429304,LOC107724188,LOC107705722,LOC107693554,LOC107551524 coding upstream 349623 13814838 ~ 13947569 (-)
LOC113530405 NA non-coding downstream 261560 13201019 ~ 13202631 (-)
G254153 NA non-coding downstream 322972 13141011 ~ 13141219 (-)
G254107 NA non-coding downstream 494180 12968364 ~ 12970011 (-)
G254110 NA non-coding downstream 531052 12932725 ~ 12933139 (-)
G254109 NA non-coding downstream 531771 12932219 ~ 12932420 (-)
G254568 cables2 non-coding upstream 125285 13590500 ~ 13590970 (-)
G254587 NA non-coding upstream 149213 13614428 ~ 13614663 (-)
G254599 NA non-coding upstream 199678 13664893 ~ 13665473 (-)
G254600 NA non-coding upstream 227582 13692797 ~ 13696620 (-)
G254567 NA non-coding upstream 234794 13700009 ~ 13700405 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 180306 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 529883 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1296396 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 1604845 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 1895588 11549394 ~ 11568603 (-)
LOC113530423 LOC108276099 other upstream 663748 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 1234057 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1793270 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 2193121 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 3182608 16647823 ~ 16695031 (-)

Expression


Co-expression Network