LOC117599296


Basic Information

Item Value
gene id LOC117599296
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 8597737 ~ 8600118 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579753.1
AACAGAAACCTCCTCAGTTGATCTGTCACTGAAGTCTGAAGAAAAGGAGTGAAAATGACAACTAAAGAGCATTCTAAACCATGAGAATACACACAGAGGACACAGATGGAGGAGCAGCAGCAAGTCAAGCAAGCAGAGGAAAGTCTCAGGAGGCCAGACTGCTGCCCTGGTGATATATTTTGCACCAGAGAGACTGAAGCCCTGGAAACTTATTAAAGCCAGTGGGGTATGACAGATCTCCCCATCTCTTTCAGTGCAGGCCAGTCTAATTCAGTTCATAAGAGCAGTGTGTATCTGGTGTATTGATGGATGAACATAACAGTTTTGTGTACAtctctatttttctttatttttgtttattcaatatacagtagataAGGTAGGACTTCACTTAAGGACCACATGACAACCACATAAGTCCTTCATAACAACtggcataaatatttattagggatACATCAATACTAATTTTGGGTATTGttcaataaacatctcatttatTGGAAGATTTATTGTAAAAATGCACTGATACCAACACCTGATACCATGCCTAAGTATCTGTACAGTTATATGCAACAGttgtatacaaatataaacatcttgggaccacacagatGCTGCAGGAatgaggcacaaattaactcccagggatgaacAAACGTTGGTCTGAtaggttcaactgaaccccaagacagCAACATAGGAACGGGCGAAGGAGTTAGAGGCATCAGGTACAAAAGTATGTAGatccaccattaagagagtcctacatcTCCATGGGCCTGAAAGGGTGTTGTGAAAGGAAGAAGCCTACTCATAGTCCAACataaaaagccagactgaagttgGCAGGTGATCACTAGCATTTTGGAGCAGaattctctggtcagatgaaacaaaaaattttactgtttggccataatgatcagtgcTACAgtatgtatggaggaaaaagggtgaggcttttaattcAAAGAACAATGTCccagctgtgaagcatgggggtggaaGCATCATGTAGTGaaggtgttttgctggaaaaaggACTGGTGTGCTTCAGAAAACaaatggcatcatgaggaaggaggattatttagaaatactgaagcaaaacgTCAAGACATCATccagaaagttaaaacatgGTCACAaatgggtcttccagcaggacagtgatcctCCAGAGtcgtaacaaaatggcttacaagcaacaaagtgaaagtagtGAATTTGTAGTAGAAAATCTGTGGATGAAGCGAAAAAGTGTATCCAAGAGAGATGGTCCATAAATCTGACTGATTTATACCAGTTCtttcaggaggaatgagcaaaaattctgcattgtgagaagcttgtggaaggctaaACCAAGcgtttgattcaagttcaagtAATTAAAAAGGCAATCCCACCAAATAACAAAGTGTATGTTAAATTTGGatccactgaaaatctgatatagtaaataaaagctgaaataaatctgtcacttagctattattttgaaattacttcttatggaaataaagtagataccctaattGACTCAACACAGGAAATCTATGGTAACATAAAATGTGtggagttgaaaaaaaaaaaaccatgggTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579753.1 True 1611 lncRNA 0.39 3 8597737 8600118

Neighbor

gene id symbol gene type direction distance location
arhgef19 arhgef19,LOC103150465,LOC106926263 coding upstream 45344 8533132 ~ 8552393 (+)
ano11 ano7l1,LOC107737547,LOC107716119,LOC107591089,LOC107593934 coding upstream 66066 8513140 ~ 8531671 (+)
plekhm2 plekhm2 coding upstream 88561 8493582 ~ 8509176 (+)
ddost ddost,LOC107673085,LOC107687429 coding upstream 106930 8483668 ~ 8490807 (+)
zbtb17 zbtb17 coding upstream 115586 8471131 ~ 8482151 (+)
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding downstream 357276 8957394 ~ 8959195 (+)
perm1 NA coding downstream 406624 9006742 ~ 9021145 (+)
noc2l noc2l coding downstream 468587 9068705 ~ 9107223 (+)
ca6 ca6 coding downstream 811355 9411473 ~ 9417779 (+)
spsb1 spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103 coding downstream 869954 9470072 ~ 9489862 (+)
G251424 NA non-coding upstream 88090 8509434 ~ 8509647 (+)
G251418 NA non-coding upstream 114180 8483292 ~ 8483557 (+)
G251417 NA non-coding upstream 114516 8482988 ~ 8483221 (+)
G251400 NA non-coding upstream 135928 8403341 ~ 8461809 (+)
G251381 NA non-coding upstream 290822 8306461 ~ 8306915 (+)
G251463 NA non-coding downstream 29817 8629935 ~ 8633785 (+)
G251462 NA non-coding downstream 51483 8651601 ~ 8672239 (+)
G251747 NA non-coding downstream 439077 9039195 ~ 9039398 (+)
G251760 NA non-coding downstream 474238 9074356 ~ 9074629 (+)
G251783 NA non-coding downstream 530833 9130951 ~ 9223205 (+)
fam131c fam131c other upstream 152132 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 215554 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 259671 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 341589 8253674 ~ 8256148 (+)
micos10 minos1,LOC107738265,LOC107590465,LOC107558746,LOC107664137 other upstream 345485 8248320 ~ 8252252 (+)
LOC113530359 rnf223 other downstream 20864 8620982 ~ 8627025 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 1670685 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 2172553 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 2243493 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 2271911 10872029 ~ 10913596 (+)

Expression


Co-expression Network