LOC117599308


Basic Information

Item Value
gene id LOC117599308
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24735723 ~ 24736373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579759.1
GGTGAGACCGGTGTGAACAGGTGAGATAGTTGAGTTGTGGAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGGAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGATGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccGGTGTGAACAGGTGAGATAGTTGAGTTGTGCAggggtgagacaggtgagaccCGTATGGACAGGTGAGATAGTTGAGTTGAGACAGGTCAAGTCTGGGCAGGTGAGACAGGTGGGACACATTAGCATTACGTTAAGCAGCAGTAAGGTGTTGCGTACGTTTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579759.1 True 485 lncRNA 0.53 3 24735723 24736373

Neighbor

gene id symbol gene type direction distance location
sgms2b LOC108275722 coding upstream 10488 24715017 ~ 24725235 (+)
aimp1b LOC108275725 coding upstream 37290 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 45828 24680620 ~ 24689895 (+)
LOC113530697 NA coding upstream 111918 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 122634 24599158 ~ 24613089 (+)
LOC117599303 NA coding downstream 60856 24797229 ~ 24801608 (+)
LOC117599304 LOC108275642 coding downstream 65519 24801892 ~ 24802529 (+)
LOC117599305 NA coding downstream 66798 24803171 ~ 24804413 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 71144 24807517 ~ 24826683 (+)
txk LOC108275609 coding downstream 120207 24856580 ~ 24868832 (+)
G260691 NA non-coding upstream 7326 24725847 ~ 24728397 (+)
LOC113530849 NA non-coding upstream 29608 24705287 ~ 24706115 (+)
G260677 NA non-coding upstream 118506 24616168 ~ 24617217 (+)
G260623 tcp1 non-coding upstream 131664 24528252 ~ 24604059 (+)
LOC117599259 NA non-coding upstream 206808 24523258 ~ 24528915 (+)
G260697 NA non-coding downstream 9408 24745781 ~ 24751808 (+)
G260664 NA non-coding downstream 32549 24768922 ~ 24771134 (+)
G260705 NA non-coding downstream 38142 24774515 ~ 24775224 (+)
G260711 NA non-coding downstream 69583 24805956 ~ 24806167 (+)
G260713 NA non-coding downstream 90950 24827323 ~ 24829045 (+)
ddx58 ddx58 other upstream 99594 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 282185 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 466456 24268577 ~ 24269267 (+)
G260415 NA other upstream 702999 24032227 ~ 24032724 (+)
G259993 NA other upstream 1346409 23387538 ~ 23389314 (+)

Expression


Co-expression Network