trnaf-gaa_28


Basic Information

Item Value
gene id trnaf-gaa_28
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11267611 ~ 11267683 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa_28
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcgatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_28 True 73 tRNA 0.53 1 11267611 11267683

Neighbor

gene id symbol gene type direction distance location
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding upstream 3218 11260774 ~ 11264393 (+)
trnah-gug_14 NA coding upstream 7693 11259847 ~ 11259918 (+)
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929 coding upstream 39255 11225609 ~ 11228356 (+)
LOC113530897 klhdc8b,LOC107712738,LOC106572099,LOC106566462 coding upstream 43981 11123944 ~ 11223630 (+)
tasorb fam208a coding upstream 164023 11090187 ~ 11103588 (+)
pard6b pard6b,LOC108436329 coding downstream 12146 11279829 ~ 11302003 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding downstream 43286 11310969 ~ 11341526 (+)
bcl2l1 bcl2l1 coding downstream 76670 11344353 ~ 11369724 (+)
nsfl1c nsfl1c coding downstream 162155 11429838 ~ 11437645 (+)
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding downstream 176711 11444394 ~ 11453985 (+)
G253151 NA non-coding upstream 20749 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 22139 11244761 ~ 11245472 (+)
G252996 NA non-coding upstream 163084 11104139 ~ 11104527 (+)
G252966 NA non-coding upstream 228180 11038218 ~ 11039431 (+)
G252955 NA non-coding upstream 267791 10998081 ~ 10999820 (+)
G253210 NA non-coding downstream 103020 11370703 ~ 11372352 (+)
G253212 NA non-coding downstream 105312 11372995 ~ 11376620 (+)
G253248 NA non-coding downstream 194031 11461714 ~ 11462757 (+)
G253301 NA non-coding downstream 461357 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 515225 11782908 ~ 11784064 (+)
oard1 oard1 other upstream 30244 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 354015 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 415083 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 487751 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 925183 10270803 ~ 10342428 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 124751 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 202368 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 215736 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 326821 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 624467 11892150 ~ 11900364 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G290724 NA non-coding CI01000080 null 1036215 ~ 1036516 (+)
rainbow trout (Oncorhynchus mykiss) trnaf-gaa-394 NA coding NW_023493751.1 JAAXML020000463.1 204389 ~ 204461 (-)
eurasian perch (Perca fluviatilis) trnaf-gaa_66 NA coding NC_053121.1 CM020918.1 23373936 ~ 23374008 (-)
tiger barb (Puntius tetrazona) trnaf-gaa_120 NA coding NC_056721.1 CM032090.1 11515799 ~ 11515871 (+)
tiger barb (Puntius tetrazona) trnas-uga_29 NA non-coding NC_056702.1 CM032071.1 25949424 ~ 25949505 (+)