trnal-uaa_2


Basic Information

Item Value
gene id trnal-uaa_2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22311806 ~ 22311888 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-uaa_2
ACCAGGATGGCCGAGTGGTTAAGGCGTTGGACTTAAGATCCAATGGACATATGTCCGCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-uaa_2 True 83 tRNA 0.54 1 22311806 22311888

Neighbor

gene id symbol gene type direction distance location
psmb11b LOC108275645,LOC102798532,LOC102212057 coding upstream 3024 22307353 ~ 22308782 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding upstream 34838 22269701 ~ 22276968 (+)
LOC113530350 LOC108275518,LOC108435541 coding upstream 59017 22245495 ~ 22252789 (+)
prdm5 prdm5,LOC102798237 coding upstream 163218 22098753 ~ 22148588 (+)
ndnf ndnf,LOC107669702 coding upstream 224597 22070435 ~ 22087209 (+)
utrn LOC108275814 coding downstream 3284 22315172 ~ 22501652 (+)
stxbp3 stxbp3,LOC107565974,LOC107748431,LOC107680060 coding downstream 331639 22643527 ~ 22656044 (+)
rabggta rabggta,LOC107680063 coding downstream 346211 22658099 ~ 22667129 (+)
LOC117595661 NA coding downstream 381352 22693240 ~ 22698904 (+)
LOC113530513 NA coding downstream 398105 22709993 ~ 22716146 (+)
LOC117599300 NA non-coding upstream 81126 22227964 ~ 22230680 (+)
G259131 NA non-coding upstream 161007 22148905 ~ 22150799 (+)
G259078 NA non-coding upstream 223055 22088182 ~ 22088751 (+)
G259097 LOC108276376 non-coding upstream 263437 22047140 ~ 22048369 (+)
G259099 LOC108276376 non-coding upstream 268748 22042779 ~ 22043058 (+)
G259267 NA non-coding downstream 168669 22480557 ~ 22481100 (+)
G259268 NA non-coding downstream 190799 22502687 ~ 22502905 (+)
G259403 NA non-coding downstream 272669 22584557 ~ 22585809 (+)
G259498 NA non-coding downstream 527329 22839217 ~ 22841739 (+)
G259536 NA non-coding downstream 701496 23013384 ~ 23015896 (+)
LOC117599233 NA other upstream 769379 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 1072807 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1404347 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1797611 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1913092 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 359510 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1059856 23371744 ~ 23383653 (+)
G259993 NA other downstream 1075650 23387538 ~ 23389314 (+)
G260415 NA other downstream 1720339 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 1956689 24268577 ~ 24269267 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G288400 NA non-coding CI01000074 null 178056 ~ 178456 (-)
rainbow trout (Oncorhynchus mykiss) trnal-uaa-61 NA coding NC_048589.1 CM023243.3 36699609 ~ 36699691 (+)
eurasian perch (Perca fluviatilis) trnal-uaa_20 NA coding NC_053129.1 CM020926.1 20877864 ~ 20877946 (-)
tiger barb (Puntius tetrazona) trnal-uaa_38 NA coding NC_056721.1 CM032090.1 2486093 ~ 2486175 (+)
tiger barb (Puntius tetrazona) trnaq-uug_13 NA non-coding NC_056704.1 CM032073.1 73647 ~ 73718 (+)
mexican tetra (Astyanax mexicanus) trnal-uaa_8 NA coding NC_035911.1 CM008314.1 32513684 ~ 32513766 (+)