G260984


Basic Information

Item Value
gene id G260984
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 15412 ~ 15891 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309145
gggagactattccataattttggggcttggtaagagaaagctctgccccctgccgtggttttggcaatgcgtggtactgatagacagcctgcatccttagagcgaagtaggcgcggcggaacgtaaggtactaacatatcgcttaaatactgcggagcgagaccgtttaatgctttataggttaggagtaatattttaaaatcgatgcggaatcttactgggagccagtgtaatgtagataagactggcgtgatatgctcatacttcctagtcctagtcaggaccctcgctgctgcgttctgaactatctgaagcttatttatgcatctagatgagcatccagatagtaaagcattacagtaatctaatctggacgtgataaatgcatggactagtttttcagcatcacttagcgaa
>TU309146
gggagactattccataattttggggcttggtaagagaaagctctgccccctgccgtggttttggcaatgcgtggtactgatagacagcctgcatccttagagcgaagtaggcgcggcggaacgtaaggtactaacatatcgcttaaatactgcggagcgagaccgtttaatgctttataggttaggagtaatattttaaaatcgatgcggaatcttactgggagccagtgtaatgtagataagactggcgtgatatgctcatacttcctagtcctagtcaggaccctcgctgctgcgttctgaactatctgaagcttatttatgcatctagatgagcatccagatagtaaagcattacagtaatctaatctggacgtgataaatgcatggactagtttttcagcatcacttagcgaaagtatatttctaatcttagcaatatttctgaggtggaaaaatgctaacctgcttacattatct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309145 False 417 lncRNA 0.44 1 15412 15828
TU309146 True 480 lncRNA 0.43 1 15412 15891

Neighbor

gene id symbol gene type direction distance location
mrpl49 mrpl49,LOC107580894 coding downstream 47888 63779 ~ 66290 (+)
znhit2 znhit2 coding downstream 50697 66588 ~ 69388 (+)
LOC113538163 LOC108276802 coding downstream 210473 226364 ~ 245418 (+)
il2rga LOC108276805 coding downstream 325780 341671 ~ 351928 (+)
LOC113523717 c2cd2 coding downstream 444371 460262 ~ 476591 (+)
LOC117599401 ehd1b,LOC108276895,LOC107718765,LOC107720605,LOC107693884,LOC107548869 non-coding downstream 36506 52397 ~ 54649 (+)
G261008 NA non-coding downstream 95086 110977 ~ 112632 (+)
G261018 NA non-coding downstream 113249 129140 ~ 133142 (+)
G261022 NA non-coding downstream 115665 131556 ~ 132272 (+)
G261020 NA non-coding downstream 116666 132557 ~ 137612 (+)
wdr74 wdr74,LOC107548868 other downstream 81798 97689 ~ 104789 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other downstream 239055 254946 ~ 266773 (+)
LOC117599405 NA other downstream 295585 311476 ~ 311986 (+)
ska2 ska2,LOC108276801 other downstream 363129 379020 ~ 436298 (+)
G261104 NA other downstream 428876 444767 ~ 480711 (+)

Expression


Co-expression Network