G261020


Basic Information

Item Value
gene id G261020
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 132557 ~ 137612 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309208
gttggtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgatgagtggataataaacgtgttggtgtgtgatgagtggataataaacgtgttggtgtgatgagtggataataaacatgtgtgtgtgtgtgtgtgtgtgtgtgcactgaccCGTAgtaaggcagtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309208 True 244 lncRNA 0.43 2 132557 137612

Neighbor

gene id symbol gene type direction distance location
znhit2 znhit2 coding upstream 63169 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 66267 63779 ~ 66290 (+)
LOC113538163 LOC108276802 coding downstream 88752 226364 ~ 245418 (+)
il2rga LOC108276805 coding downstream 204059 341671 ~ 351928 (+)
LOC113523717 c2cd2 coding downstream 322650 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 363610 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 438471 576083 ~ 612550 (+)
G261022 NA non-coding upstream 285 131556 ~ 132272 (+)
G261008 NA non-coding upstream 19925 110977 ~ 112632 (+)
LOC117599401 ehd1b,LOC108276895,LOC107718765,LOC107720605,LOC107693884,LOC107548869 non-coding upstream 77908 52397 ~ 54649 (+)
G260984 NA non-coding upstream 116666 15412 ~ 15891 (+)
G261031 NA non-coding downstream 1678 139290 ~ 141543 (+)
G261034 NA non-coding downstream 6789 144401 ~ 144867 (+)
G261044 NA non-coding downstream 42128 179740 ~ 278637 (+)
G261048 NA non-coding downstream 46374 183986 ~ 184469 (+)
G261056 sssca1 non-coding downstream 58055 195667 ~ 253441 (+)
wdr74 wdr74,LOC107548868 other upstream 27768 97689 ~ 104789 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other downstream 117334 254946 ~ 266773 (+)
LOC117599405 NA other downstream 173864 311476 ~ 311986 (+)
ska2 ska2,LOC108276801 other downstream 241408 379020 ~ 436298 (+)
G261104 NA other downstream 307155 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 344776 482388 ~ 500186 (+)

Expression


Co-expression Network