G261031


Basic Information

Item Value
gene id G261031
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 139290 ~ 141543 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309222
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcactgaccCGTAgtaaggcagtgtgtgtgtgtgagtgtgtgagtgtgtgtgtgtgcgcactgaCCCGTAGTAAGGCAGTGTGTGGCAGATGCTGAGGTACTGGAGGATGAGTGGGCggggctcagtgtgtgtgtttagtgtgtggtACTCCTTCAGTAAACTCTGCTCCAGTTCAGCACGACGCCCCGCCCTCAGCCTCAGGGTGGAgagaagccccgcccccacacCCCCCACTACATGGGCCGGCAGCAGCGATGACAACTTCCTGTc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309222 True 305 lncRNA 0.58 2 139290 141543

Neighbor

gene id symbol gene type direction distance location
znhit2 znhit2 coding upstream 69902 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 73000 63779 ~ 66290 (+)
LOC113538163 LOC108276802 coding downstream 84821 226364 ~ 245418 (+)
il2rga LOC108276805 coding downstream 200128 341671 ~ 351928 (+)
LOC113523717 c2cd2 coding downstream 318719 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 359679 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 434540 576083 ~ 612550 (+)
G261020 NA non-coding upstream 1678 132557 ~ 137612 (+)
G261024 NA non-coding upstream 3354 135419 ~ 135936 (+)
G261018 NA non-coding upstream 6148 129140 ~ 133142 (+)
G261022 NA non-coding upstream 7018 131556 ~ 132272 (+)
G261008 NA non-coding upstream 26658 110977 ~ 112632 (+)
G261034 NA non-coding downstream 2858 144401 ~ 144867 (+)
G261044 NA non-coding downstream 38197 179740 ~ 278637 (+)
G261048 NA non-coding downstream 42443 183986 ~ 184469 (+)
G261056 sssca1 non-coding downstream 54124 195667 ~ 253441 (+)
G261064 NA non-coding downstream 79677 221220 ~ 222762 (+)
wdr74 wdr74,LOC107548868 other upstream 34501 97689 ~ 104789 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other downstream 113403 254946 ~ 266773 (+)
LOC117599405 NA other downstream 169933 311476 ~ 311986 (+)
ska2 ska2,LOC108276801 other downstream 237477 379020 ~ 436298 (+)
G261104 NA other downstream 303224 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 340845 482388 ~ 500186 (+)

Expression


Co-expression Network