G261056 (sssca1)


Basic Information

Item Value
gene id G261056
gene name sssca1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 195667 ~ 253441 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309264
CCAGAAGATGACCCTGGAGTGAGATCAGTGATGTCCTGCCAGTGTGAACAGAGTAACTCGgattcagtggtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgcgtgtacACACAGTTTCAGTGCTGCAGGTGTTTGAGGCTCTGCAGTGTGTCTGCGCAGGCGCGGATCAGACCGCACAGCTGCACGCAGGACTCGAGTGAGACGGCCGTCTGCAGCTCCTGCGTGGCCCAGCGCAGCTTCTGCAGCACGACGTCCTGCGCGTCCACGGCGGCCtcgtgatgaggaggaggacgaTGAGGAAGAGCGACAGAGCTGGCGAGACCACCCGGGTTCTGCAGCGGGGGGGAGGACGGAGcaggaagtgggcggggctgcGGAGGAGCAAGCGGAGGAGGCAGGGCTCTGAGCCCAGACGCCGCTCCCTCGCAGTGCTCTGGTCTGCTACTGGGTGGGGCTTCTGGTAAGGTGGGTGTGGTTTCATCAGCATCGAGGGGGTGATGATTGGCAAGTCGTCGCTCTCGTACCTGAGACAGAGCCGCCTGAGCGTTcagagctgacacacacacacacacacacacacacacacagacacagacacacacacacacacacacacacacacacagatacacacacacacagatacacacacagatacacacacacatacagagacacacacagatacacacagatacacacagacacacagacacacagatacacacacacagatacacacacaggtcaaTCAGTAGCATGTTTCACTTACTTTTCTCATTGAGATTAAACATCAATCCAGTGTTGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309264 True 809 lncRNA 0.57 4 195667 253441

Neighbor

gene id symbol gene type direction distance location
znhit2 znhit2 coding upstream 126279 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 129377 63779 ~ 66290 (+)
il2rga LOC108276805 coding downstream 88230 341671 ~ 351928 (+)
LOC113523717 c2cd2 coding downstream 206821 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 247781 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 322642 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 362389 615830 ~ 621347 (+)
G261048 NA non-coding upstream 11198 183986 ~ 184469 (+)
G261034 NA non-coding upstream 50800 144401 ~ 144867 (+)
G261031 NA non-coding upstream 54124 139290 ~ 141543 (+)
G261020 NA non-coding upstream 58055 132557 ~ 137612 (+)
G261024 NA non-coding upstream 59731 135419 ~ 135936 (+)
G261068 htatsf1,LOC108444522 non-coding downstream 31807 285248 ~ 310549 (+)
G261067 NA non-coding downstream 54643 308084 ~ 308719 (+)
G261090 NA non-coding downstream 73821 327262 ~ 327468 (+)
G261099 NA non-coding downstream 165248 418689 ~ 422040 (+)
G261106 NA non-coding downstream 169430 422871 ~ 423758 (+)
wdr74 wdr74,LOC107548868 other upstream 90878 97689 ~ 104789 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other downstream 1505 254946 ~ 266773 (+)
LOC117599405 NA other downstream 58035 311476 ~ 311986 (+)
ska2 ska2,LOC108276801 other downstream 125579 379020 ~ 436298 (+)
G261104 NA other downstream 191326 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 228947 482388 ~ 500186 (+)

Expression


Co-expression Network