G261067


Basic Information

Item Value
gene id G261067
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 308084 ~ 308719 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309277
TCTCCTTTATTCACTCTCTTCACAGAGATACACATCAGTTACAGTCTCAAGGTAAATGTGTTTGTGGAATTAATATGGTCTGTGCAGTAAGGCTGAAAGCATAGttagcattattttttaaacacacacacacacgtcagtCTCAGTGCACATGAAGCATGAAGTGATTTTAATGAAGTGGTGagtaatatatgtatatatatcttaGTGCCTGAGACTCTGCAGTGAAgctcacacacgtacacacacgcacacacacacacacacacacacacacacagatgaacatTTAGAAGTAACATCTTCAGCGACACTCAGCGGAATGATATCATATGAGATGAAGTGCAGCGGTAGCTAACGATCCTGCGAGCTGCTCCTGCAGTCAGACACTCTGAGCTAAATGAACGTTGCGAAATCATCTTACATGTGGTTAAGGAATTTCTCGCTTTTTTGTGTCTCTACAGTTTTTTGGCGCAGTCGGTGCAGTAGATGTTTCCATCCTTGGAGATGAAGCGTTTCTCGGCGAGGTTCGCGGAACACTTCTTGCAGGTGAAGCAGTAATCGTGCCACGTTCCTCCCTCGTAGTTCACCACATTAGTGGCTTTTCCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309277 True 612 lncRNA 0.43 2 308084 308719

Neighbor

gene id symbol gene type direction distance location
LOC113538163 LOC108276802 coding upstream 62666 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 238696 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 241794 63779 ~ 66290 (+)
il2rga LOC108276805 coding downstream 32952 341671 ~ 351928 (+)
LOC113523717 c2cd2 coding downstream 151543 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 192503 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 267364 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 307111 615830 ~ 621347 (+)
G261044 NA non-coding upstream 29447 179740 ~ 278637 (+)
G261056 sssca1 non-coding upstream 54643 195667 ~ 253441 (+)
G261064 NA non-coding upstream 85322 221220 ~ 222762 (+)
G261048 NA non-coding upstream 123615 183986 ~ 184469 (+)
G261034 NA non-coding upstream 163217 144401 ~ 144867 (+)
G261090 NA non-coding downstream 18543 327262 ~ 327468 (+)
G261099 NA non-coding downstream 109970 418689 ~ 422040 (+)
G261106 NA non-coding downstream 114152 422871 ~ 423758 (+)
G261140 NA non-coding downstream 125624 434343 ~ 578767 (+)
G261101 NA non-coding downstream 208605 517324 ~ 615120 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 41311 254946 ~ 266773 (+)
wdr74 wdr74,LOC107548868 other upstream 203295 97689 ~ 104789 (+)
LOC117599405 NA other downstream 2757 311476 ~ 311986 (+)
ska2 ska2,LOC108276801 other downstream 70301 379020 ~ 436298 (+)
G261104 NA other downstream 136048 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 173669 482388 ~ 500186 (+)
bcl7ba bcl7b other downstream 198560 507279 ~ 569183 (+)

Expression


Co-expression Network