G261068 (htatsf1,LOC108444522)


Basic Information

Item Value
gene id G261068
gene name htatsf1,LOC108444522
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 285248 ~ 310549 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309278
cagggcgtcagtatcagtatcagacgtgtgtgtgcatgcgtgtgtgtgtgagtgtgtttgtgtggtgtgtttgtgtgtttgtgtgagtgtgtgtggtgtgagtgtgtggtgtgtgtgtgtgtgtgtgtttcacagtcACTCACCTTCAGGTAACAGCAGAGTCCGTCTCCTTTCTGATTCCCTTCACTGTCtttgtataatttaattttatactcCTCTGTCATCGGGTCTCTCATTATTATTCCACATTTAGACATTATCTCCGCAAACTCATCAGGAGTGATATCAGGAGGgagacCTGACACgtaaacatttgtgtttttctctttctcaataTCAAACCAGCCCGGTTCcgctttcctcttctctcctttcttcttttcctctttagTGGTTCCCAAGTCTGTCACTTCCTCCTCCtgcttctcctctttctccttctcctctttctccttctcctctttctccttctcctctttctccttctcctctttctcctctttcgGTTTCTCAGGCTGAGGTTCTCCGGTCGCCGCTGAAGCTCCATCTTCACTGAAGCCGTAATTTGCCTGATACGCAGCGATGAAGTCCTCCGTTATCTTTGGAAACCAGGCCTTCTTGTCATGGTCCCAGTCGTAGACGGTGCCGTCCTCAGGGTCCACGTACGTGTACGGATCATCTCCATCGTCCCGTCGCTGACCGTAAAGTTCCTGCAGCCGAAGCTGCTCATGAAATTCCCGATTCCCGTCCGAGTCTCCGCTCATCTGCACATTAAGAGGAGTAAAAGCAGAAGCTGGGTGTTTTATTCTCTACGTAAAAGAGGACAAGACATAAGTTTTCCTAGGAGACATCGTTATAAGaattaaatatgtgtgtgtgtgtgtgtgataaagtgaGTAAAGctaacagcgtgtctaacagtgtgtgtgttggataaagtcagtaaagctaacagtgtgtgtgtgtgtgtgtgtgtgtcctgacatGAACCACATCACTGCTCACTTTAAC
>TU309279
cagggcgtcagtatcagtatcagacgtgtgtgtgcatgcgtgtgtgtgtgagtgtgtttgtgtggtgtgtttgtgtgtttgtgtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgatagtgagagtgtgtgtgtgtgtgtgggtaccGGTGATGGGGTTCTGGCAGCCGCTGCACTTCTTGGCCACGTTTGTTTTGTAGCAGTCGACGCAGTAGAGTTTCTGCTCGTGAGAGGTGAAGCGAGTTCCAGCCAGAGGCTTcgcacaaaccacacacaccaaacactccGAGTGCCACGGCTGGTCCTGATAGTTCACTCCACCTGCTGTGAtgggctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcacgcacacatgcacgcacacatacatacatacatacatacacatacacctgCTGAGtcacagtgtgtatgtttatgtgtgtgagtgtatgtgtctgtgtctgtgtgtgtgtgtgtgtatgtgtgtgtatgatgtacgtgtgtgtgtgtatgtgtgtatgtgggagtgtgtatatgatgtgagtgtgtgggagtgtatatgatgtgtgtgtgtatgtgtgtgtgtgggcgtgtgtgtgatgtgtatgtgtgtgtgcatgtgtgtgtgtatatgatgtgtgtgtatatgtgtgtgtgtaggtgtgtatgatgtatacgcgtgtgtgcgcgcctgtgtgtgtgtgtgtatgatgatgtGTGTCTCACCTTCTTGCAGGCGGAGCAGTGTTTAGCGAATTTGCTCTCGTGGCAGCTGCTGCAGTAAACGTTCTCGTTTTTCGTGATGAAGCTCTCGGAGCCGATCGGCTTCTTACACTTATAACATGTGAAACAGTCATCATGAAACACGTTGCCTTTGTACTCCACGCTCTCTGTaccttCTGCTAGGATGGGTTTGTAGCAGGTGTGGCAGCGGGGCGCGTCCTCACGTGAGCTGCATTTCCCACACAGGATCCGGTCATCTTTCACACTGAACGACTCTTTAGCCAAATTC

Function

symbol description
htatsf1 Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and U2-type spliceosomal complex. Orthologous to human HTATSF1 (HIV-1 Tat specific factor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309278 False 1011 lncRNA 0.46 7 285248 287067
TU309279 True 1083 lncRNA 0.49 3 285248 310549

Neighbor

gene id symbol gene type direction distance location
LOC113538163 LOC108276802 coding upstream 39830 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 215860 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 218958 63779 ~ 66290 (+)
il2rga LOC108276805 coding downstream 31122 341671 ~ 351928 (+)
LOC113523717 c2cd2 coding downstream 149713 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 190673 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 265534 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 305281 615830 ~ 621347 (+)
G261044 NA non-coding upstream 6611 179740 ~ 278637 (+)
G261056 sssca1 non-coding upstream 31807 195667 ~ 253441 (+)
G261064 NA non-coding upstream 62486 221220 ~ 222762 (+)
G261048 NA non-coding upstream 100779 183986 ~ 184469 (+)
G261034 NA non-coding upstream 140381 144401 ~ 144867 (+)
G261090 NA non-coding downstream 16713 327262 ~ 327468 (+)
G261099 NA non-coding downstream 108140 418689 ~ 422040 (+)
G261106 NA non-coding downstream 112322 422871 ~ 423758 (+)
G261140 NA non-coding downstream 123794 434343 ~ 578767 (+)
G261101 NA non-coding downstream 206775 517324 ~ 615120 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 18475 254946 ~ 266773 (+)
wdr74 wdr74,LOC107548868 other upstream 180459 97689 ~ 104789 (+)
LOC117599405 NA other downstream 927 311476 ~ 311986 (+)
ska2 ska2,LOC108276801 other downstream 68471 379020 ~ 436298 (+)
G261104 NA other downstream 134218 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 171839 482388 ~ 500186 (+)
bcl7ba bcl7b other downstream 196730 507279 ~ 569183 (+)

Expression


Co-expression Network