ska2 (ska2,LOC108276801)


Basic Information

Item Value
gene id ska2
gene name ska2,LOC108276801
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 379020 ~ 436298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309311
CCTGTTGTTGTCGACGTAGCGGATGAGTAGAGGGTAAAGAGCGTATAAATCTCTGCAGAGGACGGCGAACTCGTCCCGTATGGTTCCCTCCTCCTCGTCCCCCTCCGTTTTGCCCTCCATGCGCAGGTGCTCCTCCTCGGCCACCACCTTCGCCGTGCGCTTCTTCAGCTTCTCCATCGTCGGGATGAAGTGAGACTTGAGCATCTCGGGCTTCGCTCTGCTCACGATCGGCTGAGAGAACACTGCAACACATGCGACACACCAGTTTGGAAACTTCTCTTGAATAACTGTGTTGCTTTATTAGTGCAGATCAGTTTGCAGTGATTACGTTTAGGTGACGTTTAATTAAAGACGTAACGTTAATCACCTGCCAGTCTCTTCATCCAGGGAGCCTCGTCAATGCCCAGGTTGTTGACGACGATCTTCATGATGCTGCCCAGCAGCTGGTTGAGGTGCTCGGAGGTGACGTGGGTGCAGAGTTTGCCCTCTAGCTCGGGGTGGTTTTCCACACCCCTCTCCCACCAGCGGGGCAGATAGTTACACAGCATGGGCAGGGTGACTTCGATCACATGGGGCATCTCCGTGTAGCGAGCGCCTGATTCAGCCAGGTGACTGATCTCCCTCATCAACACATCCAACTCCGGGATGTCCAAACACAACTCCTGCACCTCATTAGGCAGACCcaggactgagagagagagagagagagagagagagagagagagaaatcccataattctgttcaccagcACCATTTCTCCCAGGTCATCTCTGAGCCAGGTGAGAACAGATACAGGTGAAGAAgtaaattatttcaaaatactCCATCATTATAATATgacaaagctgaaaaaaagtCCCAAATTGCACTAATTTTTATACACAAAAAGGCAATTTataatgtggaaatgttcattTCAATGTGTGTTactgaatctgtgtgtgtgtgatatttgtgtgtaatatctgtgtgtaatatgtgtttAATTAAAGTCTCATTAAACCA
>XM_034312540.1
GCCAATAGGAAGACGCGTTGCATTCTCCGCTCGCGCCGTATTTCCGGGGCTGCTTCAGGAATGTAAACTATTCAACATGGAGACAGCAGTTGATAAGCTGGAGGCGATGttCCAGAAGGCCGAGGCGGATATCGAGTACGTGGAGAAGCGGCTGAAGTTCGATTTCGTGACGAGCGCTCGGGAGAACGGCTCTGCTGAGgggAACCCTGTTCAGCTGCTGGAGAGTCTGGCGGCCGTTAAGGCTCGTCACGCCGCTCTGTGTGTTCAGATGGAGGAAATCGCCGCCGAACAGAAACGCTCGATGGATTCGATCAGATCTCACCTGAACACCACGGTGAAGCTGGTGGAGGAGCTGCAGAACACGACAGACACACAGGTTCCTCCACTCACACAGGAAGAACAGGAAGCGAGAGATTccctctgttcatcagtcacagcTCTGTCTCtacagACGCCCTCTGAAGCGCACACACAGCAGGAGTCTGACTCACAGGAAAAGCGCAGAGACGTGAAAGACGTGGAGTTCGAAGCCGTTCCACGAAGTGTACGAGGAAACGTCAAGCTCGGTGACCTCAACACCCTGTACACACAGCTGACTGAACACTTCTCCTCAGACAACAACAGagCTCCTCTGAGTTTGCAGAAGATGAGGAAACTGAACATGAGAGTGAGCGAGGCTGCGATTAAGACGCTGCAGCACCTCGGCCTCATCGAGCTGGATAGGAAAGGCTCCGTCTCTCTCTCGTCCTCACACTGAGGATAAAAACACCAGACCGAACAGACGCTCCGAAGTAAACGAGTTCCGTCTCCTCCACGTGTCCGACACTCGAGCTTGTAGACAGCCATGTTGAGCGCACACAGAGCTTTAGACTCAGCGTTCTCCTCTACACGACATTTATCACTTCATAATGCTTTATTTTAGAAACTTAAATACGACGTTCAGGTTAGTTGTGTGTCAATAAAGCGTTATAGCATTTCAGATGCACAGTATTTCTAACAGGGTAGcgtactgagagagagagagagagctgagagagagagagagagagagagagagagagaagagaaatcccataattctgttcaccagcACCATTTCTCCCAGGTCATCTCTGAGCCAGGTGAGAACAGATACAGGTGAAGAAgtaaattatttcaaaatactCCATCATTATAATATgacaaagctgaaaaaaagtCCCAAATTGCACTAATTTTTATACACAAAAAGGCAATTTataatgtggaaatgttcattTCAATGTGTGTTactgaatctgtgtgtgtgtgatatttgtgtgtaatatctgtgtgtaatatgtgtttAATTAAAGTCTCATTAAACCACAAATTCCAA

Function

symbol description
ska2 Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including chromosome segregation; mitotic cell cycle; and regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm; kinetochore; and microtubule. Predicted to be part of outer kinetochore. Predicted to be active in spindle microtubule. Orthologous to human SKA2 (spindle and kinetochore associated complex subunit 2).

NR:

description
PREDICTED: spindle and kinetochore-associated protein 2-like

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0000940 condensed chromosome outer kinetochore cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309311 False 1006 lncRNA 0.48 2 379020 436288
XM_034312540.1 True 1357 mRNA 0.48 7 428149 436298

Neighbor

gene id symbol gene type direction distance location
il2rga LOC108276805 coding upstream 27092 341671 ~ 351928 (+)
LOC113538163 LOC108276802 coding upstream 133602 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 309632 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 312730 63779 ~ 66290 (+)
LOC113523717 c2cd2 coding downstream 23964 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 64924 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 139785 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 179532 615830 ~ 621347 (+)
rabgef1 rabgef1 coding downstream 187088 623386 ~ 636006 (+)
G261090 NA non-coding upstream 51552 327262 ~ 327468 (+)
G261068 htatsf1,LOC108444522 non-coding upstream 68471 285248 ~ 310549 (+)
G261067 NA non-coding upstream 70301 308084 ~ 308719 (+)
G261044 NA non-coding upstream 100383 179740 ~ 278637 (+)
G261101 NA non-coding downstream 81026 517324 ~ 615120 (+)
LOC117599335 ppm1e non-coding downstream 221107 657405 ~ 684364 (+)
G261173 NA non-coding downstream 269245 705543 ~ 706282 (+)
G261176 NA non-coding downstream 275126 711424 ~ 713068 (+)
G261190 NA non-coding downstream 334960 771258 ~ 773261 (+)
LOC117599405 NA other upstream 67034 311476 ~ 311986 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 112247 254946 ~ 266773 (+)
wdr74 wdr74,LOC107548868 other upstream 274231 97689 ~ 104789 (+)
G261104 NA other downstream 8469 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 46090 482388 ~ 500186 (+)
bcl7ba bcl7b other downstream 70981 507279 ~ 569183 (+)
trim37 trim37,LOC107691657 other downstream 167428 603726 ~ 656209 (+)
G261178 NA other downstream 289529 725827 ~ 727725 (+)

Expression


Co-expression Network