G261099


Basic Information

Item Value
gene id G261099
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 418689 ~ 422040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309317
TTTGGAATAAATGTTCTTTATTATTCAGCATCATATTTTTGTTACTGCACTTACACTAAagcagtgaggtgtgtgtgtgtgtgtgtgtgtgtgatgagtttCACTGCACAGGACAGAGTCGTTCATAATTtctctgaatattttattttaatttagacCGGGTCAATATGGACGtttaaacacagcacatcatgaTCGGCGTcggcacagagacacaaacgTAAAAAAGAAAACGGACGTGTGTGTTGAAGCTGGTGAAGCCGACTGTTTGCAGATGGAGTGTGGATTCGAGTCTCGGCTCCTCAGTCAGCAGGAAAATCAGAGGCCATGTGGGAAATTTAgagttgattattattatttttttataaataatgattGTTAGGTGGGCGGAGTTGTGTGTCGGACGCTCACAGCTTCATGTTGGCCACGAAATCTTCTCCTTTCTTGATGGAACCCTTGAGTTCAGCCAGAGCTTCAGACACGAGCTTCTCCTCGAACGCAGAGAGCTTCCCCAGACCCAGGTTCTTCTCAATGCCgtttttccCCGAGCAGCAGAGGTGTGGAGAAGTATTTACACTCGGTCTCCTCTGATCGCACGAATGCGCACTCCACCACTCCCTCTTTCCCGTTCATGGCGTcaaggagagagaaagtgaagcGAGCTCCAGCGTAGGCCATCGACAGAGTGGCagaacctgaaacacacacacacacacacacacacacacacacacacacacacacacacacactattattaaCCCTGTGGAATCATCAGGCCGCTCCATGTCCCAGTCATTAATGTGATATTCTTCTGAATAACTCCGAGATAGTGGCGGGAAGAAACAAACGTGAAAGAGTGGAAGCTGATCTTTCACATGATATCTAGATTATCTCTGTATCTCCTTAGTGGAAGTGGAAATGTCTCGTTTTTAAAACTGTGTGCATGTTTTACTTATTGTGTGACTCTTACTTCAGGAAGTAACAAAACCCCAGTTTTCAGAATCACAATCACTTTTACTGCCAAGTGACTGAGTTTACACGTACAAGCAATTTGTCTCGGTGCACTGGTGCTTagtataacagtaaaatacaagaaataaaaagattatTAATAAAGGTAAACCACTATTaacaaatatagaaatatattatatatatataaaaaatagagACATTAACTGTACATTAGTGCAGGACGTGCAAAAGTGGGCCAGTGCAAACACTCCTCATTTATTCAGTAAAATGTCGTTTTTCATACGCGACTCTGTTACAGCAacgttttaaaaaataaaaaaagaagaaaagatgagGTTTAAAAGCCGAGGGTTTTGCTGAAAACAACGACGGCAAACAGTTTAATGTGGTATAATACAGCAGAACTAAATCTACAGCAAAACAATCAAAACTAATTTAGACTCCAGAGTGATAAAGCACACAAAGCTCAGCTCAGAGGCGAACGCTACGTGCTTTACGTTTCACtcttagttttaaaaaaagggaattCTAAACCTTGAAAACTCctcaataataacacacactggaGTTTCTGTTTGGCCGAGGTGAGAAAGCTCACGTGTGTGGTTTACAGATGAATGTTAGCGTAGGAGAGACACGTCACAGCGCCGTGTGCGTCGGagtgaaacaaatgaaaaggcAGATGAAAGCCTCTGTACCTGCTCCAGCTTTGGCCTTCACCACCTCAGTTCCTGCCTCCTGAATTCTCTCGGTCAGAGCGGAAAGCTGATCGGCGGGAAACTCCACCTTCGGAGTGCACTACAGCGCAAACACAACACtgatcatctcatctcatctcatcaacACGCTGACACACACCAACAACCTCAACGCGGCCCGGCGAGCCGCAGCACGTGCAGGTCCACgcttttactttattaaacGCACGCGCCCCAGACTGCATCATCCGACAGATCACGTCACAgaaaatatactgaaatattaaaatatatctttaaacaccagaaaaacatttccagttttaaatcatttgtatttCCACTCAGGAAGCAGCTtcaaaaagagcaaaataaaaatcacattaaaatcaGAAAGCTATTAGAACATTACGGTGTTTCGATGTCattgattttaaaacattaaaacatttaacagttacgtgtgtaaaggttaaaacaCTAAAAGTTTATAATACGTAAAgtttaaagtgttaaaacacTATGATATTCCAGctggttgctaaggtgttgttaagtggttgctatgctaacccagttggttgctagtgTGCTGCTACTTGGTTGCTATGAACAGTTAAGCATGTAAAGCGTTAAACGTTAAGCTAAGAAAGCTAAAAAGCACAAATGTTATGTTGCTAGCATATTCAAactggttgctagggtgttgctatggtaacccagttggttgctagggtgttagTAGGTGGCTCTTATGGGGTCCCAggttgttgctatggtgttAGCTAGATTGTAGCTAGTTGGTTGCTAAGGAAACTTGAAAATAATAATCCACCGGGTTGCTAGGATGTTGCTAGGgggttgctatggtgtttctAGGAAGTTTCTCTATGATGGGTGTCATTTGGTtgctaggttttttttaaatcattacctGTGAAATCAGGGGAATGATGGTTTTCCCGGCGTGGCCTCCAATCACAGGAACGTTGACGCGAGCCGGATCGAGACCCTGCAGATAAACGCAGATGATCAGCAACAAcgtaaaataaattatatagatCTATCTTAAAAACACAGTAATAAAATCCAGCAGTGTAAAAGATCACAGACTTAAAAACTGCACCTGAAGGATAAGAGAACAGAACACAGGACCGTAATATAAACAtacagataaagataaagatctGTATagcgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgacccatactcggaatttgtgctctgcatttaacccatccaagtgcacacacacacacacacacacacacacacacagtagtgaacacacccggagcagtgtgCAGtgccggggagcagttgggggttcggtgccttgctgaagggtctgacctcagtggtggtattgagggagagacgctggtcattcactcccccacctacaatccctgcagcacctgagactcgaacccacaaccttcaggttcaccttcgggttacaagaccgactctctatccattaggccacgactat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309317 True 3215 lncRNA 0.43 2 418689 422040

Neighbor

gene id symbol gene type direction distance location
il2rga LOC108276805 coding upstream 66761 341671 ~ 351928 (+)
LOC113538163 LOC108276802 coding upstream 173271 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 349301 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 352399 63779 ~ 66290 (+)
LOC113523717 c2cd2 coding downstream 38222 460262 ~ 476591 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding downstream 79182 501222 ~ 507099 (+)
cux1a LOC108276869,LOC106568027 coding downstream 154043 576083 ~ 612550 (+)
kctd7 kctd7,LOC106603469 coding downstream 193790 615830 ~ 621347 (+)
rabgef1 rabgef1 coding downstream 201346 623386 ~ 636006 (+)
G261090 NA non-coding upstream 91221 327262 ~ 327468 (+)
G261068 htatsf1,LOC108444522 non-coding upstream 108140 285248 ~ 310549 (+)
G261067 NA non-coding upstream 109970 308084 ~ 308719 (+)
G261044 NA non-coding upstream 140052 179740 ~ 278637 (+)
G261106 NA non-coding downstream 831 422871 ~ 423758 (+)
G261140 NA non-coding downstream 12303 434343 ~ 578767 (+)
G261101 NA non-coding downstream 95284 517324 ~ 615120 (+)
LOC117599335 ppm1e non-coding downstream 235365 657405 ~ 684364 (+)
G261173 NA non-coding downstream 283503 705543 ~ 706282 (+)
LOC117599405 NA other upstream 106703 311476 ~ 311986 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 151916 254946 ~ 266773 (+)
wdr74 wdr74,LOC107548868 other upstream 313900 97689 ~ 104789 (+)
G261104 NA other downstream 22727 444767 ~ 480711 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other downstream 60348 482388 ~ 500186 (+)
bcl7ba bcl7b other downstream 85239 507279 ~ 569183 (+)
trim37 trim37,LOC107691657 other downstream 181686 603726 ~ 656209 (+)
G261178 NA other downstream 303787 725827 ~ 727725 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location