G261101


Basic Information

Item Value
gene id G261101
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 517324 ~ 615120 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309322
TTACAGCACGACATTTattcagaagtgtgtgtatgaaaagtgatgatgatgatgatgatgatgatcgcTAAATACacaatgaaaagtaaaaaaaaaagtaaatacatgatctattattcattttgttttctgttctgatgtttattttacaagaATTCTTTATTCCTTCTGAGCTTaaatccatttttctttcttttaagagTCTCAGTCTGTGTCTTTCACACACTCCCCACTGAAGATATCTTTAATCAAGCGTATTCTCATGCGTTATTAAGAAATGACAGAttataatgtgtatttttaacTCTTTATTGACAAAGGGAGGGGAAAACACGTATAAACAGGTACAAACGCGGCCGACGTGACCTTCACTCCTGCTCCTTGTCCTCTCCGTGAGTGATGACGTAGCACAGGTTTTTGTAGTCCAGGTTTCCAGCAACGTCCAGCGGGAAGTTTGTGAACATCTGATTTACCTGAAAGTGTCACAAACGGAGGTGTGAGGAGCACTTTCACTCCgcgcattaacac
>TU309323
CTTCACTCCTGCTCCTTGTCCTCTCCGTGAGTGATGACGTAGCACAGGTTTTtgtatttttaacTCTTTATTGACAAAGGGAGGGGAAAACACGTATAAACAGGTACAAACGCGGCCGACGTGACCTTCACTCCTGCTCCTTGTCCTCTCCGTGAGTGATGACGTAGCACAGGTTTTTGTAGTCCAGGTTTCCAGCAACGTCCAGCGGGAAGTTTGTGAACATCTGATTTACCTGAAAGTGTCACAAACGGAGGTGTGAGGAGCACTTTCACTCCgcgcattaacac
>TU309324
TTACAGCACGACATTTattcagaagtgtgtgtatgaaaagtgatgatgatgatgatgatgatgatcgcTAAATACacaatgaaaagtaaaaaaaatctattattcattttgttttctgttctgatgtttattttacaagaATTCTTTATTCCTTCTGAGCTTaaatccatttttctttcttttaagagTCTCAGTCTGTGTCTTTCACACACTCCCCACTGAAGATATCTTTAATCAAGCGTATTCTCATGCGTTATTAAGAAATGACAGAttataatgtgtatttttaacTCTTTATTGACAAAGGGAGGGGAAAACACGTATAAACAGGTACAAACGCGGCCGACGTGACCTTCACTCCTGCTCCTTGTCCTCTCCGTGAGTGATGACGTAGCACAGGTTTTTGTAGTCCAGGTTTCCAGCAACGTCCAGCGGGAAGTTTGTGAACATCTGATTACCTCTGCCTCTGTGAATTTGTCTGCCTGGGACATGAGATGGTATTTGAtcctgaaatgtgaaaataaacagatttcagatgtttgatgtgtaaCTGAACAAAAACATTTGCAATTCAAAGCAGAAACAATGTGatgaac
>TU309327
TTACAGCACGACATTTattcagaagtgtgtgtatgaaaagtgatgatgatgatgatgatgatgatcgcTAAATACacaatgaaaagtaaaaaaaaagtaaatacatgatctattattcattttgttttctgttctgatgtttattttacaagaATTCTTTATTCCTTCTGAGCTaaatccatttttctttcttttaagagTCTCAGTCTGTGTCTTTCACACACTCCCCACTGAAGATATCTTTATTCCTTCTGAGCTTaaatccatttttctttcttttaagagTCTCAGTCTGTGTCTTTCACACACTCCCCACTGAAGATATCTTTAATCAAGCGTATTCTCATGCGTTATTAAGAAATGACAGAttataatgtgtatttttaacTCTTTATTGACAAAGGGAGGGGAAAACACGTATAAACAGGTACAAACGCGGCCGACGTGACCTTCACTCCTGCTCCTTGTCCTCTCCGTGAGTGATGACGTAGCACAGGTTTTTGTAGTCCAGGTTTCCAGCAACGTCCAGCGGGAAGTTTGTGAACATCTGATTTACCTGAAAGTGTCACAAACGGAGGTGTGAGGAGCACTTTCACTCCgcgcattaacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309322 False 528 lncRNA 0.38 3 517324 615120
TU309323 False 287 lncRNA 0.48 3 517685 615120
TU309324 False 596 lncRNA 0.37 3 517324 570178
TU309327 True 611 lncRNA 0.38 3 517324 615120

Neighbor

gene id symbol gene type direction distance location
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding upstream 10225 501222 ~ 507099 (+)
LOC113523717 c2cd2 coding upstream 40733 460262 ~ 476591 (+)
il2rga LOC108276805 coding upstream 165396 341671 ~ 351928 (+)
LOC113538163 LOC108276802 coding upstream 271906 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 447936 66588 ~ 69388 (+)
kctd7 kctd7,LOC106603469 coding downstream 710 615830 ~ 621347 (+)
rabgef1 rabgef1 coding downstream 8266 623386 ~ 636006 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 101085 716205 ~ 719326 (+)
umodl1 umodl1 coding downstream 114898 730018 ~ 743991 (+)
mogat2 mogat2,LOC107751377,LOC107579037,LOC107691703 coding downstream 147957 763077 ~ 775278 (+)
G261106 NA non-coding upstream 93566 422871 ~ 423758 (+)
G261099 NA non-coding upstream 95284 418689 ~ 422040 (+)
G261090 NA non-coding upstream 189856 327262 ~ 327468 (+)
G261068 htatsf1,LOC108444522 non-coding upstream 206775 285248 ~ 310549 (+)
LOC117599335 ppm1e non-coding downstream 42285 657405 ~ 684364 (+)
G261173 NA non-coding downstream 90423 705543 ~ 706282 (+)
G261176 NA non-coding downstream 96304 711424 ~ 713068 (+)
G261190 NA non-coding downstream 156138 771258 ~ 773261 (+)
G261183 NA non-coding downstream 179080 794200 ~ 795370 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other upstream 17138 482388 ~ 500186 (+)
G261104 NA other upstream 36613 444767 ~ 480711 (+)
ska2 ska2,LOC108276801 other upstream 81026 379020 ~ 436298 (+)
LOC117599405 NA other upstream 205338 311476 ~ 311986 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 250551 254946 ~ 266773 (+)
G261178 NA other downstream 110707 725827 ~ 727725 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 486669 1101789 ~ 1112278 (+)
G261503 NA other downstream 590871 1205991 ~ 1237132 (+)
ponzr2 LOC108277330 other downstream 796866 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 2129276 2744396 ~ 2747317 (+)

Expression


Co-expression Network