G261140


Basic Information

Item Value
gene id G261140
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 434343 ~ 578767 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309384
aatctagaaaatccagaaggctggtGCACAGAGCAGAGCTTTCatgagaggattttaaaattcaaacactaagaGTAAGGAAACctggttagtgttagtgctcagTAACGCTCTAGAACAGTGCGTAAGTGTgagatttgtctgtttttattgctgAGCTACACTAATGCAGCGAGTCAGGAGAGTGAAAACGACAAAAATAACACgtatacatgcacacaaaatc

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU309384 True 226 lncRNA 0.40 2 434343 578767

Neighbor

gene id symbol gene type direction distance location
il2rga LOC108276805 coding upstream 82415 341671 ~ 351928 (+)
LOC113538163 LOC108276802 coding upstream 188925 226364 ~ 245418 (+)
znhit2 znhit2 coding upstream 364955 66588 ~ 69388 (+)
mrpl49 mrpl49,LOC107580894 coding upstream 368053 63779 ~ 66290 (+)
kctd7 kctd7,LOC106603469 coding downstream 37063 615830 ~ 621347 (+)
rabgef1 rabgef1 coding downstream 44619 623386 ~ 636006 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 137438 716205 ~ 719326 (+)
umodl1 umodl1 coding downstream 151251 730018 ~ 743991 (+)
mogat2 mogat2,LOC107751377,LOC107579037,LOC107691703 coding downstream 184310 763077 ~ 775278 (+)
G261106 NA non-coding upstream 10585 422871 ~ 423758 (+)
G261099 NA non-coding upstream 12303 418689 ~ 422040 (+)
G261090 NA non-coding upstream 106875 327262 ~ 327468 (+)
G261068 htatsf1,LOC108444522 non-coding upstream 123794 285248 ~ 310549 (+)
G261067 NA non-coding upstream 125624 308084 ~ 308719 (+)
LOC117599335 ppm1e non-coding downstream 78638 657405 ~ 684364 (+)
G261173 NA non-coding downstream 126776 705543 ~ 706282 (+)
G261176 NA non-coding downstream 132657 711424 ~ 713068 (+)
G261190 NA non-coding downstream 192491 771258 ~ 773261 (+)
G261183 NA non-coding downstream 215433 794200 ~ 795370 (+)
LOC117599405 NA other upstream 122357 311476 ~ 311986 (+)
fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 other upstream 167570 254946 ~ 266773 (+)
wdr74 wdr74,LOC107548868 other upstream 329554 97689 ~ 104789 (+)
trim37 trim37,LOC107691657 other downstream 24959 603726 ~ 656209 (+)
G261178 NA other downstream 147060 725827 ~ 727725 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 523022 1101789 ~ 1112278 (+)
G261503 NA other downstream 627224 1205991 ~ 1237132 (+)
ponzr2 LOC108277330 other downstream 833219 1411986 ~ 1419489 (+)

Expression


Co-expression Network