G261173


Basic Information

Item Value
gene id G261173
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 705543 ~ 706282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309434
tctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctaccCGCATGTGAGAAATGGAGCGCAACAACGCTGCTGCCGACATCTTGAAGAAAAGCTTCCTGATGGATGATGGttggagaggaggaggaggaggagggaggcaACTGCAGCAGTGACGCTGTGCAACGCAAAAACTGGGGATTTACCACTAGGGCACCTCGAGTCACGGACACGGAGGGGGGAACGCACCTCAACACACCGAGCTCACCGCTTTTAAAATCACAGTGTccgcatgcacacacgcacacacacacacacacacacagagagagagaggagccgTTCAGATGCAACTGCATGCACTATACAAATGACAGCATAAAAGAAGCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309434 True 406 lncRNA 0.53 2 705543 706282

Neighbor

gene id symbol gene type direction distance location
rabgef1 rabgef1 coding upstream 69537 623386 ~ 636006 (+)
kctd7 kctd7,LOC106603469 coding upstream 84196 615830 ~ 621347 (+)
cux1a LOC108276869,LOC106568027 coding upstream 92993 576083 ~ 612550 (+)
tbl2 tbl2,LOC107734476,LOC107691705,LOC107686137,LOC107728824 coding upstream 198444 501222 ~ 507099 (+)
LOC113523717 c2cd2 coding upstream 228952 460262 ~ 476591 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 9923 716205 ~ 719326 (+)
umodl1 umodl1 coding downstream 23736 730018 ~ 743991 (+)
mogat2 mogat2,LOC107751377,LOC107579037,LOC107691703 coding downstream 56795 763077 ~ 775278 (+)
dgat2 dgat2,LOC107746984,LOC107691652 coding downstream 75241 781523 ~ 794093 (+)
uvrag uvrag,LOC108411119,LOC102207598 coding downstream 90557 796839 ~ 865864 (+)
LOC117599335 ppm1e non-coding upstream 21179 657405 ~ 684364 (+)
G261101 NA non-coding upstream 90423 517324 ~ 615120 (+)
G261140 NA non-coding upstream 126776 434343 ~ 578767 (+)
G261106 NA non-coding upstream 281785 422871 ~ 423758 (+)
G261099 NA non-coding upstream 283503 418689 ~ 422040 (+)
G261176 NA non-coding downstream 5142 711424 ~ 713068 (+)
G261190 NA non-coding downstream 64976 771258 ~ 773261 (+)
G261183 NA non-coding downstream 87918 794200 ~ 795370 (+)
G261193 NA non-coding downstream 109105 815387 ~ 815836 (+)
G261199 NA non-coding downstream 149252 855534 ~ 855826 (+)
trim37 trim37,LOC107691657 other upstream 49334 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 136360 507279 ~ 569183 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other upstream 205357 482388 ~ 500186 (+)
G261104 NA other upstream 224832 444767 ~ 480711 (+)
ska2 ska2,LOC108276801 other upstream 269245 379020 ~ 436298 (+)
G261178 NA other downstream 19545 725827 ~ 727725 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 395507 1101789 ~ 1112278 (+)
G261503 NA other downstream 499709 1205991 ~ 1237132 (+)
ponzr2 LOC108277330 other downstream 705704 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 2038114 2744396 ~ 2747317 (+)

Expression


Co-expression Network