G261183


Basic Information

Item Value
gene id G261183
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 794200 ~ 795370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309461
TATATGAGTGTTATATGAGCGTTAGATGAGTGTTATATGAGTGTTATATGAGCGTTATATGAGTGTTATATGAGCGTTATATGAGCGTTAGAGGAGCGTTATATGAGTGTTATATGAGTGTTAGATGAGTGTTATATGAGTGTTATATGAGCGTTATATGAGCGTTATATGAGTGTTATATGAGCGTTAGAGGAGCGTTATATGAGTGTTATATGAGCGTTAGATGAGTGTTAGATGAGTGTTATATGAGCGTTATATGAGTGTTATATGAGCGTTAGATGAGTGATTGAGTCACTGTAGACCTGAAAGTgcctatgtagtgcactcaTGTCAGAAGTAGTGAActgaatccaaaatggcttccgTCTGGTCGTATAGTTCACTACGCAGTGTGCATTAGTGCGTGTATTCATGCTGCCTGGCCGAGTGCCCTTTGATTAGGGGTAGTGTACGAGGGAGAGTTGAAAGTGTTATTGTAACACAGCGATAATCATAAATGAAGATCAGGTGTAAAATGTTTTGGGGTgaatcttttctctctctgattgtAAAACCAGGTTTATTTGATCCCTtaagttatttttgttattattattattgttgttattatttttttatggtttttatgtttttctttttttttgcacaagcAATGCAATGTAAGAGACAGACACAGCTGTAGCCAGAGCGACAGACTGGACTGTGTCTGAGCAGGAAAAAGGACGTGATTGTGTTTATAATCAgtgcacaaataaaaacatgaaataaaaagaaagctgaaattttcTCGTGAAGCGGAAACGGTAATGTGAGGAATATCATCAGCTGCAGAAGTCTGATCATATCTGCGTAACGTCTGATTCAACATGTTCACGTGTAATTGTcgaataaagtgtttattggATTATAAGGTGCCGCTGAAGTGTTAATAAATATGCATCATGTGTAAAGAAGCAGAGTAAAGAAGCATGACTTTTGCTGCAGATCTGATTTGTTGTAATGAAACATTCACTGACTTTACCAATGATTagattttatgtttaaaatgttataaatatgtaaagttGAACTGGATCATGCACACTGAGCTGATTCTTAAAAATCTAACTTTTATATGtttttggaataaaaataaaatgtacaaaactg

Function

GO:

id name namespace
GO:0031514 motile cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309461 True 1149 lncRNA 0.35 2 794200 795370

Neighbor

gene id symbol gene type direction distance location
dgat2 dgat2,LOC107746984,LOC107691652 coding upstream 107 781523 ~ 794093 (+)
mogat2 mogat2,LOC107751377,LOC107579037,LOC107691703 coding upstream 18922 763077 ~ 775278 (+)
umodl1 umodl1 coding upstream 50209 730018 ~ 743991 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding upstream 74874 716205 ~ 719326 (+)
rabgef1 rabgef1 coding upstream 158194 623386 ~ 636006 (+)
uvrag uvrag,LOC108411119,LOC102207598 coding downstream 1469 796839 ~ 865864 (+)
and3 LOC108277318 coding downstream 296709 1092079 ~ 1094333 (+)
trnal-uag_7 NA coding downstream 299481 1094851 ~ 1094932 (+)
trnal-aag_10 NA coding downstream 304002 1099372 ~ 1099453 (+)
pcolcea LOC108277346 coding downstream 324160 1119530 ~ 1128252 (+)
G261190 NA non-coding upstream 20939 771258 ~ 773261 (+)
G261176 NA non-coding upstream 81132 711424 ~ 713068 (+)
G261173 NA non-coding upstream 87918 705543 ~ 706282 (+)
LOC117599335 ppm1e non-coding upstream 109836 657405 ~ 684364 (+)
G261101 NA non-coding upstream 179080 517324 ~ 615120 (+)
G261193 NA non-coding downstream 20017 815387 ~ 815836 (+)
G261199 NA non-coding downstream 60164 855534 ~ 855826 (+)
G261201 NA non-coding downstream 74584 869954 ~ 873772 (+)
G261415 NA non-coding downstream 84307 879677 ~ 941189 (+)
G261431 LOC108277356 non-coding downstream 174543 969913 ~ 1055910 (+)
G261178 NA other upstream 66475 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 137991 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 225017 507279 ~ 569183 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other upstream 294014 482388 ~ 500186 (+)
G261104 NA other upstream 313489 444767 ~ 480711 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 306419 1101789 ~ 1112278 (+)
G261503 NA other downstream 410621 1205991 ~ 1237132 (+)
ponzr2 LOC108277330 other downstream 616616 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1949026 2744396 ~ 2747317 (+)
pcp4a NA other downstream 2000121 2795491 ~ 2817263 (+)

Expression


Co-expression Network