G261199


Basic Information

Item Value
gene id G261199
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 855534 ~ 855826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309477
gagtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgagtgtgtgtgtgtgtgtgtggaccgtATTATCAGTGACACTTAAAAACTAAAGAATATTATAATGTGAGAATTTAATGAAGCCACATGACATAGAGTTTTCTCTTAAATAAAACCAGATGTTGatcagatgtgtgtttgtgtgtgtgtgtttgtgagtttgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309477 True 218 lncRNA 0.39 2 855534 855826

Neighbor

gene id symbol gene type direction distance location
dgat2 dgat2,LOC107746984,LOC107691652 coding upstream 61441 781523 ~ 794093 (+)
mogat2 mogat2,LOC107751377,LOC107579037,LOC107691703 coding upstream 80256 763077 ~ 775278 (+)
umodl1 umodl1 coding upstream 111543 730018 ~ 743991 (+)
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding upstream 136208 716205 ~ 719326 (+)
rabgef1 rabgef1 coding upstream 219528 623386 ~ 636006 (+)
and3 LOC108277318 coding downstream 236253 1092079 ~ 1094333 (+)
trnal-uag_7 NA coding downstream 239025 1094851 ~ 1094932 (+)
trnal-aag_10 NA coding downstream 243546 1099372 ~ 1099453 (+)
pcolcea LOC108277346 coding downstream 263704 1119530 ~ 1128252 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding downstream 504884 1360710 ~ 1387400 (+)
G261193 NA non-coding upstream 39698 815387 ~ 815836 (+)
G261183 NA non-coding upstream 60164 794200 ~ 795370 (+)
G261190 NA non-coding upstream 82273 771258 ~ 773261 (+)
G261176 NA non-coding upstream 142466 711424 ~ 713068 (+)
G261173 NA non-coding upstream 149252 705543 ~ 706282 (+)
G261201 NA non-coding downstream 14128 869954 ~ 873772 (+)
G261415 NA non-coding downstream 23851 879677 ~ 941189 (+)
G261431 LOC108277356 non-coding downstream 114087 969913 ~ 1055910 (+)
G261508 LOC108277042 non-coding downstream 310653 1166479 ~ 1204782 (+)
G261510 NA non-coding downstream 347174 1203000 ~ 1214496 (+)
G261178 NA other upstream 127809 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 199325 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 286351 507279 ~ 569183 (+)
prdm15 prdm15,LOC107578663,LOC108413920,LOC106512200,LOC106511912,LOC107728867,LOC107686138 other upstream 355348 482388 ~ 500186 (+)
G261104 NA other upstream 374823 444767 ~ 480711 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 245963 1101789 ~ 1112278 (+)
G261503 NA other downstream 350165 1205991 ~ 1237132 (+)
ponzr2 LOC108277330 other downstream 556160 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1888570 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1939665 2795491 ~ 2817263 (+)

Expression


Co-expression Network