fhl1b (fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848)


Basic Information

Item Value
gene id fhl1b
gene name fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 301010 ~ 316325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309540
GAATTTGGCTAAAGAGTCGTTCAGTGTGAAAGATGACCGGATCCTGTGTGGGAAATGCAGCTCACGTGAGGACGCGCCCCGCTGCCACACCTGCTACAAACCCATCCTAGCAGgtACAGAGAGCGTGGAGTACAAAGGCAACGTGTTTCATGATGACTGTTTCACATGTTATAAGTGTAAGAAGCCGATCGGCTCCGAGAGCTTCATCACGAAAAACGAGAACGTTTACTGCAGCAGCTGCCACGAGAGCAAATTCGCTAAACACTGCTCCGCCTGCAAGAAGcccaTCACAGCAGGTGGAGTGAACTATCAGGACCAGCCGTGGCACTCggagtgtttggtgtgtgtggtttgtgcgAAGCCTCTGGCTGGAACTCGCTTCACCTCTCACGAGCAGAAACTCTACTGCGTCGACTGCTACAAAACAAACGTGGCCAAGAAGTGCAGCGGCTGCCAGAACCCCATCACCgGTTTTGGAAAAGCCACTAATGTGGTGAACTACGAGGGAGGAACGTGGCACGATTACTGCTTCACCTGCAAGAAGTGTTCCGCGAACCTCGCCGAGAAACGCTTCATCTCCAAGGATGGAAACATCTACTGCACCGACTGCGCCAAAAAACTGTAGAGACACAAAAAAGCGAGAAATTCCTTAACCACATGTAAGATGATTTCGCAACGTTCATTTAGCTCAGAGTGTCTGACTGCAGGAGCAGCTCGCAGGATCGTTAGCTACCGCTGCACTTCATCTCATATGATATCATTCCGCTGAGTGTCGCTGAAGATGTTACTTCTAAatgttcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtacgtgtgtgagcTTCACTGCAGAGTCTCAGGCACtaagatatatatacatatattactCACCACTTCATTAAAATCACTTCATGCTTCATGTGCACTGAGactgacgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaaaaataatgctaaCTATGCTTTCAGCCTTACTGCACAGACCATATTAATTCCACAAACACATTTACCTTGAGACTGTAACTGATGTGTATCTCTGTGAAGAGAGTGAATAAAGG
>TU309541
GAATTTGGCTAAAGAGTCGTTCAGTGTGAAAGATGACCGGATCCTGTGTGGGAAATGCAGCTCACGTGAGGACGCGCCCCGCTGCCACACCTGCTACAAACCCATCCTAGCAGgtACAGAGAGCGTGGAGTACAAAGGCAACGTGTTTCATGATGACTGTTTCACATGTTATAAGTGTAAGAAGCCGATCGGCTCCGAGAGCTTCATCACGAAAAACGAGAACGTTTACTGCAGCAGCTGCCACGAGAGCAAATTCGCTAAACACTGCTCCGCCTGCAAGAAGcccaTCACAGCAGGTGGAGTGAACTATCAGGACCAGCCGTGGCACTCggagtgtttggtgtgtgtggtttgtgcgAAGCCTCTGGCTGGAACTCGCTTCACCTCTCACGAGCAGAAACTCTACTGCGTCGACTGCTACAAAACAAACGTGGCCAAGAAGTGCAGCGGCTGCCAGAACCCCATCACCgGTTTTGGAAAAGCCACTAATGTGGTGAACTACGAGGGAGGAACGTGGCACGATTACTGCTTCACCTGCAAGAAGTGTTCCGCGAACCTCGCCGAGAAACGCTTCATCTCCAAGGATGGAAACATCTACTGCACCGACTGCGCCAAAAAACTGTAGAGACACAAAAAAGCGAGAAATTCCTTAACCACATGTAAGATGATTTCGCAACGTTCATTTAGCTCAGAGTGTCTGACTGCAGGAGCAGCTCGCAGGATCGTTAGCTACCGCTGCACTTCATCTCATATGATATCATTCCGCTGAGTGTCGCTGAAGATGTTACTTCTAAatgttcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtacgtgtgtgagcTTCACTGCAGAGTCTCAGGCACtaagatatatatacatatattactCACCACTTCATTAAAATCACTTCATGCTTCATGTGCACTGAGactgacgtgtgtgtgtgtgtgtgtttaaaaaataatgctaaCTATGCTTTCAGCCTTACTGCACAGACCATATTAATTCCACAAACACATTTACCTTGAGACTGTAACTGATGTGTATCTCTGTGAAGAGAGTGAATAAAGG
>TU309542
GAATTTGGCTAAAGAGTCGTTCAGTGTGAAAGATGACCGGATCCTGTGTGGGAAATGCAGCTCACGTGAGGACGCGCCCCGCTGCCACACCTGCTACAAACCCATCCTAGCAGgtACAGAGAGCGTGGAGTACAAAGGCAACGTGTTTCATGATGACTGTTTCACATGTTATAAGTGTAAGAAGCCGATCGGCTCCGAGAGCTTCATCACGAAAAACGAGAACGTTTACTGCAGCAGCTGCCACGAGAGCAAATTCGCTAAACACTGCTCCGCCTGCAAGAAGcccaTCACAGCAGGTGGAGTGAACTATCAGGACCAGCCGTGGCACTCggagtgtttggtgtgtgtggtttgtgcgAAGCCTCTGGCTGGAACTCGCTTCACCTCTCACGAGCAGAAACTCTACTGCGTCGACTGCTACAAAACAAACGTGGCCAAGAAGTGCAGCGGCTGCCAGAACCCCATCACCgGTTTTGGAAAAGCCACTAATGTGGTGAACTACGAGGGAGGAACGTGGCACGATTACTGCTTCACCTGCAAGAAGTGTTCCGCGAACCTCGCCGAGAAACGCTTCATCTCCAAGGATGGAAACATCTACTGCACCGACTGCGCCAAAAAACTGTAGAGACACAAAAAAGCGAGAAATTCCTTAACCACATGTAAGATGATTTCGCAACGTTCATTTAGCTCAGAGTGTCTGACTGCAGGAGCAGCTCGCAGGATCGTTAGCTACCGCTGCACTTCATCTCATATGATATCATTCCGCTGAGTGTCGCTGAAGATGTTACTTCTAAatgttcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtg
>TU309543
GAATTTGGCTAAAGAGTCGTTCAGTGTGAAAGATGACCGGATCCTGTGTGGGAAATGCAGCTCACGTGAGGACGCGCCCCGCTGCCACACCTGCTACAAACCCATCCTAGCAGgtACAGAGAGCGTGGAGTACAAAGGCAACGTGTTTCATGATGACTGTTTCACATGTTATAAGTGTAAGAAGCCGATCGGCTCCGAGAGCTTCATCACGAAAAACGAGAACGTTTACTGCAGCAGCTGCCACGAGAGCAAATTCGCTAAACACTGCTCCGCCTGCAAGAAGcccaTCACAGCAGGTGGAGTGAACTATCAGGACCAGCCGTGGCACTCggagtgtttggtgtgtgtggtttgtgcgAAGCCTCTGGCTGGAACTCGCTTCACCTCTCACGAGCAGAAACTCTACTGCGTCGACTGCTACAAAACAAACGTGGCCAAGAAGTGCAGCGGCTGCCAGAACCCCATCACCgGTTTTGGAAAAGCCACTAATGTGGTGAACTACGAGGGAGGAACGTGGCACGATTACTGCTTCACCTGCAAGAAGTGTTCCGCGAACCTCGCCGAGAAACGCTTCATCTCCAAGGATGGAAACATCTACTGCACCGACTGCGCCAAAAAACTGTAGAGACACAAAAAAGCGAGAAATTCCTTAACCACATGTAAGATGATTTCGCAACGTTCATTTAGCTCAGAGTGTCTGACTGCAGGAGCAGCTCGCAGGATCGTTAGCTACCGCTGCACTTCATCTCATATGATATCATTCCGCTGAGTGTCGCTGAAGATGTTACTTCTAAatgttcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtacgtgtgtgagcTTCACTGCAGAGTCTCAGGCACtaagatatatatacatatattactCACCACTTCATTAAAATCACTTCATGCTTCATGTGCACTGAGactgacgtgtgtgtgtgtgtttaaaaaataatgctaaCTATGCTTTCAGCCTTACTGCACAGACCATATTAATTCCACAAACACATTTACCTTGAGACTGTAACTGATGTGTATCTCTGTGAAGAGAGTGAATAAAGG
>TU309563
TCCGTCAGTCTCTCATATGAGCAGAGTGAGGGAGAAACATTAACAGTCTCTGAGACGGGACGGAGGATAAGAGTCTCCTGCTGAGAAGCTGtgtcaCCATGTCGGACCGTTTCGCCTGTTTTTATTGCCGTGATGATCTGAGTGGGAAGAAATACGTGCAGAAGGACGACAAGCCGGTGTGTGTTCGCTGCTTCGACAAATTCTGCGCCAACAACTGTGCCGAGTGTCGCCGTCCAATCAGCACGGACTCGAAGGTCCCGCCCACTTCTCACAACACACCAATCAGATAACATGcacaacactaacactacattgtattttaatgaataGTAATAAACACTGGCATCTTCATTTTAACCTTTATCACATTTTCACCTTTCACCTGTCCTCCCTTTTACCTGTAAGCCACTGTTTACCTCTGAGGCGCTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCACTGTTTACCTGTAAGCCACTGTTTACCTCTGAGGCACTGTTTACCTGTAAGGCGCTGTTTACCTGTAAGGCAC
>TU309564
TCCGTCAGTCTCTCATATGAGCAGAGTGAGGGAGAAACATTAACAGTCTCTGAGACGGGACGGAGGATAAGAGTCTCCTGCTGAGAAGCTGtgtcaCCATGTCGGACCGTTTCGCCTGTTTTTATTGCCGTGATGATCTGAGTGGGAAGAAATACGTGCAGAAGGACGACAAGCCGGTGTGTGTTCGCTGCTTCGACAAATTCTGCGCCAACAACTGTGCCGAGTGTCGCCGTCCAATCAGCACGGACTCGAAGGTCCCGCCCACTTCTCACAACACACCAATCAGATAACATGcacaacactaacactacattgtattttaatgaataGTAATAAACACTGGCATCTTCATTTTAACCTTTATCACATTTTCACCTTTCACCTGTCCTCCCTTTTACCTGTAAGCCACTGTTTACCTCTGAGGCGCTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCGCTGTTTACCTCTGAGGCACTGTTTACCTGTAAGGCACTGTTTACCTGTAAGCCACTGTTTACCTCTGAGGCGCTGTTTACCTGTAAGGCACTGTTTACCTGTGAGGCACTGTTTACCTGTGAGGCACTGTTTACCTGTAAGG
>TU309565
TCCGTCAGTCTCTCATATGAGCAGAGTGAGGGAGAAACATTAACAGTCTCTGAGACGGGACGGAGGATAAGAGTCTCCTGCTGAGAAGCTGtgtcaCCATGTCGGACCGTTTCGCCTGTTTTTATTGCCGTGATGATCTGAGTGGGAAGAAATACGTGCAGAAGGACGACAAGCCGGTGTGTGTTCGCTGCTTCGACAAATTCTGCGCCAACAACTGTGCCGAGTGTCGCCGTCCAATCAGCACGGACTCGAAGGTCCCGCCCACTTCTCACAACACACCAATCAGATAACATGcacaacactaacactacattgtattttaatgaataGTAATAAACACTGGCATCTTCATTTTAACCTTTATCACATTTTCACCTTTCACCTGTCCTCCCTTTTACCTGTAAGCCACTGTTTACCTCTGAGGCGCTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCACTGTTTACCTGTAAGGCGCTGTTTACCTGTAAGGCGCTGTTTACCTGTAAGGCAC
>XM_034312928.1
TGCTGCCTGCgccctccctccctcacacactccctctgtcACTCACTCCGTCAGTCTCTCATATGAGCAGAGTGAGGGAGAAACATTAACAGTCTCTGAGACGGGACGGAGGATAAGAGTCTCCTGCTGAGAAGCTGtgtcaCCATGTCGGACCGTTTCGCCTGTTTTTATTGCCGTGATGATCTGAGTGGGAAGAAATACGTGCAGAAGGACGACAAGCCGGTGTGTGTTCGCTGCTTCGACAAATTCTGCGCCAACAACTGTGCCGAGTGTCGCCGTCCAATCAGCACGGACTCGAAGGTCCCGCCCACTTCTCACAACACACCAATCAGATAACATGcacaacactaacactacattGTTTACCTGTGCACTCTGTTATACTGGAATTTGGCTAAAGAGTCGTTCAGTGTGAAAGATGACCGGATCCTGTGTGGGAAATGCAGCTCACGTGAGGACGCGCCCCGCTGCCACACCTGCTACAAACCCATCCTAGCAGgtACAGAGAGCGTGGAGTACAAAGGCAACGTGTTTCATGATGACTGTTTCACATGTTATAAGTGTAAGAAGCCGATCGGCTCCGAGAGCTTCATCACGAAAAACGAGAACGTTTACTGCAGCAGCTGCCACGAGAGCAAATTCGCTAAACACTGCTCCGCCTGCAAGAAGcccaTCACAGCAGGTGGAGTGAACTATCAGGACCAGCCGTGGCACTCggagtgtttggtgtgtgtggtttgtgcgAAGCCTCTGGCTGGAACTCGCTTCACCTCTCACGAGCAGAAACTCTACTGCGTCGACTGCTACAAAACAAACGTGGCCAAGAAGTGCAGCGGCTGCCAGAACCCCATCACCgGTTTTGGAAAAGCCACTAATGTGGTGAACTACGAGGGAGGAACGTGGCACGATTACTGCTTCACCTGCAAGAAGTGTTCCGCGAACCTCGCCGAGAAACGCTTCATCTCCAAGGATGGAAACATCTACTGCACCGACTGCGCCAAAAAACTGTAGAGACACAAAAAAGCGAGAAATTCCTTAACCACATGTAAGATGATTTCGCAACGTTCATTTAGCTCAGAGTGTCTGACTGCAGGAGCAGCTCGCAGGATCGTTAGCTACCGCTGCACTTCATCTCATATGATATCATTCCGCTGAGTGTCGCTGAAGATGTTACTTCTAAatgttcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtacgtgtgtgagcTTCACTGCAGAGTCTCAGGCACtaagatatatatacatatattactCACCACTTCATTAAAATCACTTCATGCTTCATGTGCACTGAGactgacgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaaaaataatgctaaCTATGCTTTCAGCCTTACTGCACAGACCATATTAATTCCACAAACACATTTACCTTGAGACTGTAACTGATGTGTATCTCTGTGAAGAGAGTGAATAAAGGAGATCAATcagaaaaa

Function

symbol description
fhl1b Predicted to enable transmembrane transporter binding activity. Acts upstream of or within animal organ development; calcium ion homeostasis; and locomotory behavior. Is expressed in several structures, including cardiovascular system; digestive system; hypochord; liver primordium; and musculature system. Human ortholog(s) of this gene implicated in Uruguay faciocardiomusculoskeletal syndrome; X-linked Emery-Dreifuss muscular dystrophy 6; reducing body myopathy 1A; and reducing body myopathy 1B. Orthologous to human FHL1 (four and a half LIM domains 1).

NR:

description
PREDICTED: four and a half LIM domains protein 1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309540 False 1104 lncRNA 0.48 4 308087 310549
TU309541 False 1084 lncRNA 0.48 5 308087 310549
TU309542 False 859 lncRNA 0.51 5 301010 310549
TU309543 False 1080 lncRNA 0.48 5 308087 310549
TU309563 False 553 lncRNA 0.47 4 310844 316279
TU309564 False 622 lncRNA 0.47 5 311294 316279
TU309565 False 553 lncRNA 0.47 3 310844 316279
XM_034312928.1 True 1506 mRNA 0.49 7 308071 316325

Neighbor

gene id symbol gene type direction distance location
htatsf1 htatsf1 coding downstream 13414 278217 ~ 287596 (-)
si:ch73-52f15.5 NA coding downstream 24618 271615 ~ 276392 (-)
f9b f9 coding downstream 50031 245190 ~ 250979 (-)
arr3a LOC108276670 coding downstream 78223 213699 ~ 222787 (-)
LOC113525643 LOC108276659 coding downstream 89224 205604 ~ 211786 (-)
slc9a6b LOC108276804 coding upstream 12694 329019 ~ 337810 (-)
ryr1a ryr1a,LOC108276801,LOC107728853 coding upstream 35951 352276 ~ 410008 (-)
zgc:153345 LOC108276606 coding upstream 94063 410388 ~ 417639 (-)
mdh2 mdh2,LOC107691667,LOC107588934,LOC107728883,LOC107686142 coding upstream 102489 418814 ~ 427273 (-)
LOC113523729 tex14 coding upstream 119984 436309 ~ 460235 (-)
G261234 NA non-coding downstream 145623 123090 ~ 155387 (-)
G261235 NA non-coding downstream 157274 142188 ~ 143736 (-)
G261203 NA non-coding downstream 167868 129140 ~ 133142 (-)
G261212 NA non-coding downstream 168738 131553 ~ 132272 (-)
G261211 NA non-coding downstream 181489 110549 ~ 119521 (-)
G261276 NA non-coding upstream 30707 347032 ~ 348187 (-)
G261281 NA non-coding upstream 100253 416578 ~ 501521 (-)
G261283 NA non-coding upstream 115792 432117 ~ 492726 (-)
G261264 NA non-coding upstream 116693 433018 ~ 480696 (-)
G261287 NA non-coding upstream 149825 466150 ~ 466832 (-)
LOC117599327 NA other upstream 665081 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other upstream 690589 1006914 ~ 1014289 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other upstream 699482 1015807 ~ 1112393 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 949127 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 1459236 1775561 ~ 1780407 (-)

Expression


Co-expression Network