G261534


Basic Information

Item Value
gene id G261534
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1241824 ~ 1248681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309899
gagtgttcctaaaggtgcgttctaaatggagtgttcctaaaggtgcgttctaagtggactgttcctaaaggtgcgttctaaatggactgttcctaaaggtgcgttctaaatggacTGTTCCTAATGGACTGTTCCTaatggagtgttcctaaaggtgcggtAAGATGGAGgtgttaactgtgtgtgtgtgtgtaatgtatatgtgtgtagtgtgtgtgtatgttgtgtgtgtgtgtgtgtgtgtgtaatgtatgtgtgtgtagtgtgtgtgtgtgtaatgtatatgtgtgtaatgtgtgtgtgtgtataaagcagTGTGAACTCTACCTGGTGTCTGTGAGGATGAGGTATGAATGTCCCAGGCTTCTGGCACAGACCGGTTCATAGCAGGCATCATTCCTGTCTCAccacacctgaaacacacacacacacacac

Function

GO:

id name namespace
GO:0016769 transferase activity, transferring nitrogenous groups molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU309899 True 436 lncRNA 0.44 4 1241824 1248681

Neighbor

gene id symbol gene type direction distance location
pcolcea LOC108277346 coding upstream 113572 1119530 ~ 1128252 (+)
trnal-aag_10 NA coding upstream 142371 1099372 ~ 1099453 (+)
trnal-uag_7 NA coding upstream 146892 1094851 ~ 1094932 (+)
and3 LOC108277318 coding upstream 147491 1092079 ~ 1094333 (+)
uvrag uvrag,LOC108411119,LOC102207598 coding upstream 375960 796839 ~ 865864 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding downstream 112029 1360710 ~ 1387400 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding downstream 152868 1401549 ~ 1408834 (+)
LOC113524161 NA coding downstream 171690 1420371 ~ 1423465 (+)
tlx3b LOC108276618 coding downstream 201477 1450158 ~ 1461224 (+)
LOC113524165 LOC108277141 coding downstream 263883 1512564 ~ 1523146 (+)
G261510 NA non-coding upstream 27328 1203000 ~ 1214496 (+)
G261508 LOC108277042 non-coding upstream 37042 1166479 ~ 1204782 (+)
G261431 LOC108277356 non-coding upstream 185914 969913 ~ 1055910 (+)
G261415 NA non-coding upstream 300635 879677 ~ 941189 (+)
G261201 NA non-coding upstream 368052 869954 ~ 873772 (+)
G261544 NA non-coding downstream 14626 1263307 ~ 1264140 (+)
G261585 NA non-coding downstream 85101 1333782 ~ 1333986 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding downstream 179469 1428150 ~ 1510087 (+)
G261634 LOC108276785 non-coding downstream 348081 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 351790 1600471 ~ 1615601 (+)
G261503 NA other upstream 4692 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 129546 1101789 ~ 1112278 (+)
G261178 NA other upstream 514099 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 585615 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 672641 507279 ~ 569183 (+)
ponzr2 LOC108277330 other downstream 163305 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1495715 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1546810 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1867488 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 2004635 3253316 ~ 3576137 (+)

Expression


Co-expression Network