G261544


Basic Information

Item Value
gene id G261544
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1263307 ~ 1264140 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU309909
ATAAAAACGTGTCTCCTGAAGCATTATGTAAGGACTCAGAGACGCCTGTGAGTTTTATAACGTCTTTTAATGTTCTCCAGTTcatatacacaacatacagTGTGTAATAGCCTTTATATGAAATAGAAATATGAACGCCGTTTTCCCCCGAACCCGTTACTCTCATCCCGAGTCGCTGCGactgaacaaaatgaaaagcaaCAGGTGCAAGTGTATATTTGGCGACCCAGCGTTAATATTAGAGCAGGTGCACTTAGTAAATATCTGTAATATATCTCTATCCCTCCCCCATCAcacagttatacacacacacacacacacacacacacacggccacgGCAGACGAGAGGATCACCGTGAGATTTGGTGACAGTGTGCTTCACGAGTCTGTCCGCTGCCTCTCAGTCCCTCTGTACAAAAATATGGACAGTTTCAATTCTCTATTTCTGAAATATAACACGCAGAGAGGTTTCAATCTCCATAAACTTAAACCGTAACGGGTTCGAGTGAGGATCACATGGCCACGGGGTCATGTGATCAAATCAACGAATGATGATCAAGAAACGTAATCCGTTATACGACATTTTAATCGTGGACGCTTCAAAATATCATCATTACACCCCGGGGTTCAATACGACACGCAGCGACATCACCGTTCATTCCAGATGAATCAATTCTCACATCATCGTGTTACACTGTtaaacacctcacacacacacacacacacacacacgtatacacacacacacatgcacgcacacacacacacacacacacacacacacacacacgcacacacacacacacatgcacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU309909 True 834 lncRNA 0.44 1 1263307 1264140

Neighbor

gene id symbol gene type direction distance location
pcolcea LOC108277346 coding upstream 135055 1119530 ~ 1128252 (+)
trnal-aag_10 NA coding upstream 163854 1099372 ~ 1099453 (+)
trnal-uag_7 NA coding upstream 168375 1094851 ~ 1094932 (+)
and3 LOC108277318 coding upstream 168974 1092079 ~ 1094333 (+)
uvrag uvrag,LOC108411119,LOC102207598 coding upstream 397443 796839 ~ 865864 (+)
fgf11b fgf11b,LOC103026543,LOC108443340,LOC107677987,LOC103363034 coding downstream 96570 1360710 ~ 1387400 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding downstream 137409 1401549 ~ 1408834 (+)
LOC113524161 NA coding downstream 156231 1420371 ~ 1423465 (+)
tlx3b LOC108276618 coding downstream 186018 1450158 ~ 1461224 (+)
LOC113524165 LOC108277141 coding downstream 248424 1512564 ~ 1523146 (+)
G261534 NA non-coding upstream 14626 1241824 ~ 1248681 (+)
G261536 NA non-coding upstream 16696 1245800 ~ 1246611 (+)
G261510 NA non-coding upstream 48811 1203000 ~ 1214496 (+)
G261508 LOC108277042 non-coding upstream 58525 1166479 ~ 1204782 (+)
G261431 LOC108277356 non-coding upstream 207397 969913 ~ 1055910 (+)
G261585 NA non-coding downstream 69642 1333782 ~ 1333986 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding downstream 164010 1428150 ~ 1510087 (+)
G261634 LOC108276785 non-coding downstream 332622 1596762 ~ 1610711 (+)
G261638 LOC108276785 non-coding downstream 336331 1600471 ~ 1615601 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 363546 1627686 ~ 1678077 (+)
G261503 NA other upstream 26175 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 151029 1101789 ~ 1112278 (+)
G261178 NA other upstream 535582 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 607098 603726 ~ 656209 (+)
bcl7ba bcl7b other upstream 694124 507279 ~ 569183 (+)
ponzr2 LOC108277330 other downstream 147846 1411986 ~ 1419489 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1480256 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1531351 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1852029 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1989176 3253316 ~ 3576137 (+)

Expression


Co-expression Network