G261634 (LOC108276785)


Basic Information

Item Value
gene id G261634
gene name LOC108276785
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1596762 ~ 1610711 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310010
GCTGACTCTCAAACGTCCACGTGCTGTCCGGTAGTGACGCATCGAGCACGCTCAGAGTGTTTGTAAAGTCTGTGGTGCTGCTGGGCTTAACGAGGGTGAAATCACTGAATTCGGACATTGGAGAGAGATAGGAGCCGAAGGACTGACTCTGAGACATCATGTCTCCTCCCAGCACCTCCACATATTTAATGGGTCCGTCAGTGTTGAGCTGGATCTGCAGGTTTCTGTTGGGGTTTTTATATTCACAATCGCTCCGTCTGATACAGCAACTCGAGCTGCCTCTACTGCTTCGAGCACATTTTACCAATAAGACCAAAAATGTCACCAAACACAGCAGTGAGACGGAGGCGAGAGAAATGATGAGATATAATGTGATTTTGCTACTTTTCTTATCaggttctgtgtttttgtgtctaaAGTCTGAGACTGGTTCATGAAAGCCGTCCTCTATCAGTATATCCACAGTGACTGTGGTGGACTGCACCGGTTCTCCGTTGTCCTTTATCTCTATGAGCAGTCTCTGAGAGGAGTCATCCTGCTCTGCAACAGAGCGCTTAGTCCTCACCTCTCCTGTGTGTAAAGTGACAGTGAAGAGAGACGCGTCCGTGGCCTCCGCTAGCCGATAGGAAATCCAGGCGTTATGGCCCGAGTCAGCGTCCACTGCTGTGACTTTAGTAACGAGGTGTCCTGCTTTAGCGGAGCGGGGCATCCTCTGATGAGACACAGAGCCCATGAGTGCGGAGGGGTAAATGACAGCGGGGGCGTTGTCGTTCTGGTCCACGATAAAAACATGAACCGTGGCGTTGCTGCTCAGAGACGGAGAGCCGTGATCTTTCGCTTGGACTTGGAGCTGAAATACCTTCGTTCTTTCATAGTCAAAAGAATGCATGCTAAAAATGCTTCCGTTATctgaattaatataaaaataagaggAGACCGAAATGTCCTGAATACGCGACTCTGTAATTGAATAAGAAATTTTGGAATTTTCTCCCTGATCTGGATCAGAAGCTGATACAGTGCATAACACATTTCCAGCACGAACATTTTCTTTTGCGTAAATCACATATGAGGACTGTAAAAAGACCGGGGGGTTATCATTTACATCTAATACTTCAACAGATATCTGAGTTGTAGACCGAAGCGGTGGAGCTCCAGAATCTTCCGCCATAATCTCCACCGTGTATTTAGGGAACGTTTCCTGATCTAAAGTTGAATCGGTGATTAATGCGTAATAGTTGGAAATAGACGGTTTTAGTGTAAATGGTAAACCCGGCTGTATGCTCAGTCTGACTTTGCCGTTTTCTCCGGAATCACTGTCCTTTGCTCCGATTAGAGCTACTACTGTACCAGGGGCTGCGTCTTCTCTAACTGGTTTAGGAAGAGATTTCAGAATAATCTCAGGCACGTTGTCATTTACATCCAGTATTTCAATTTCTACACTGCAGAGACCCTCTAAAGGCGAAGCCCCTTTATCTGAGGCGATCACCTCAAAAATGAAGGAACTGACTAATTCATAATCTAAATAATCTTTAACCGTGATGGCACCGTTTTCTGGATCAATAGAGAATAAATTCTGAATGCTCTCTGGCGTGCTCGgttcaaatgaataaattagcTCGCTATTTACACCTTCATCTGCATCTTTGGCTTTAACTGTCAGAATTACGGTTCCCCTTGCGGTGTTTTCGGGTAGTTTCACCTTGTAGGATGCTTTTTCAAAGACAGGAGAATTATCGTTATAGTCTTGTACCCGTACAATAATTGCGGTTGTTCCAGACCTTGCTGGAGTCCCACCATCCACTGCGGTCAGCACGAGGTTGTGCGTGGACTGCTTCTCCCTGTCCAGAGCCTTTTCTAAAACTAATTCAGGGATTTTCGTGCCATTCTTATTTTTCACACTCAGAAcgaaatattcatttttacttaGTGTGTATGCCTGTAGAGAATTTGAGCCTATATCCGGGTCTTTTGCCGTTTCCAAACGGAATCTTGCTCCTGGCGTTCTAGCTTCCTCCACATTAACAACGATTTGATTATTAAGAAAAAACGGCGAGTTGTCATTCACATCTTGTATGTCGATTTCCACACGATACATTTGTAAAGGGTTTTCTATAATTGCTTCTAGCGTTAATGTACACCTCGCGACTGTAGCACATATCTGCTCCCTGTCGACTCTGTCTGTAATTATTAGCTCCCCCTTCCCCAAATCAATACCGAAATACTGCTTACCAGATTCGCTCGCTATCTGTAATTTACGATCGTGTATTTCAGAAAGTCCAAGGTCCAGATCTTTTGCGATGTTTCCAACCACAGACCCTATTTTCAATTCCTCGGGAATGGAGTAGCGAATCTGCGCCTCTATTGTACTCCAAACGAGACAGAAAATCCACAGCACTTGCCACGAAAAGCGCGATTTCCATGTTATGGCTCCCATCTCCATGAGTGTGATGCTGATAAATATTCTGCTTCCAAAACCATCGCAAGTTAAAATGTTCGTCCTAATCCATAACCAGCATCCCAAAACGCTGGCTCTAAAGCTACCCTCATTGTGAACGCTGTCCTGTCAGTCTGCGCTTTGCTTGTGGAATATGGCACTGAGGCTTGGGGGAGAGACTGGATCTCTTTGTGTGTTTCAGCACCCTATTGGCGGACAGCGCTCCAATTGCTTACAAGCCTGAGCAGCGCCTTAAAGGGACATGCATGCTAGACAGACTGAAAACAGCACTGTGTGGTGCATTGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310010 True 2745 lncRNA 0.45 3 1596762 1610711

Neighbor

gene id symbol gene type direction distance location
LOC113524200 NA coding upstream 43073 1552268 ~ 1553689 (+)
LOC113524165 LOC108277141 coding upstream 73616 1512564 ~ 1523146 (+)
tlx3b LOC108276618 coding upstream 135538 1450158 ~ 1461224 (+)
LOC113524161 NA coding upstream 173297 1420371 ~ 1423465 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding upstream 187928 1401549 ~ 1408834 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding downstream 201888 1812599 ~ 1826322 (+)
avd LOC108277130 coding downstream 259948 1870659 ~ 1873142 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding downstream 371442 1982153 ~ 2053236 (+)
LOC117599403 NA coding downstream 732950 2343661 ~ 2347385 (+)
smtlb sl,LOC108276625 coding downstream 1039943 2650654 ~ 2653366 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding upstream 86675 1428150 ~ 1510087 (+)
G261585 NA non-coding upstream 262776 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 332622 1263307 ~ 1264140 (+)
G261534 NA non-coding upstream 348081 1241824 ~ 1248681 (+)
G261536 NA non-coding upstream 350151 1245800 ~ 1246611 (+)
G261642 LOC108276791,LOC108276664,LOC108276785,LOC108276794,LOC108276798,LOC108437803 non-coding downstream 16975 1627686 ~ 1678077 (+)
G261644 LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544 non-coding downstream 23900 1634611 ~ 1644162 (+)
G261643 LOC108276792,LOC108276799,LOC108276796,LOC108437803,LOC107688304,LOC105905981 non-coding downstream 71508 1682219 ~ 1704174 (+)
G261647 LOC108276799,LOC108276792,LOC108276796,LOC108437803,LOC107586188 non-coding downstream 101826 1712537 ~ 1718736 (+)
G261853 NA non-coding downstream 153127 1763838 ~ 1767984 (+)
ponzr2 LOC108277330 other upstream 177273 1411986 ~ 1419489 (+)
G261503 NA other upstream 359630 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 484484 1101789 ~ 1112278 (+)
G261178 NA other upstream 869037 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 940553 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1133685 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1184780 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1505458 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1642605 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 3467142 5077853 ~ 5080643 (+)

Expression


Co-expression Network