G261644 (LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544)


Basic Information

Item Value
gene id G261644
gene name LOC108276798,LOC108276785,LOC108276794,LOC108276793,LOC108437803,LOC108416544
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1634611 ~ 1644162 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310024
CGAGATGGCTGTCCGTTATCCTCCACAAGTACAGTGAGCTTTTGTTTCACAGCATCTTTGTCAGTGACCTGGCGCACAGTTCGTATCTCTCCATTCTGCGCTCCCACTTCAAACAGCGCCCTGTCTGTGGCTTTGTGGAGTTTGTAGGAGAGCCAGGCATTCTGTCCAGAGTCCACATCAACAGCCACCACTTTAGTGACCAGATAGCCGACATCTGCTGAACGAGGCACAATCTCAGCCAGCACAGAGCCACCAGTCTGTACTGGGTAGAGAACCTGAGGAGCGTTGTCATTCTGATCTTGGATGGTAATTTTTACTGTCACGTTACTACTGAGTGGAGGAGAGCCTCCGTCCTGCGCTCTTACGCGGAAATGGAAGTCCTTTAACTGCTCGTAGTAGAAAAGAGCGCGCGGCATTAATGACTCCACTATCAGCACTTACTGACACATATGATGATACAGGAACTCCATTGACAGTGCTCTCTTCTAAAATATAAGAAAGTCGAGCATTCTGGTTGGAGTCTGCGTCACTGGCCTTCACTGAGAATATAGAGAGACCTGGTGTGTTGTTCTCCACCACATAGGCCTCGTAATTATTTCTGTCAAAAACAGGCGCGTTGTCATTTACATCTGATATGTGTAAACGGAGAGAAGTGCTGCTGGAGAGTGAGGGAACGCCCTCATCAGAGCAAGTCACAGTGATGTTATactcagcttctctctctctatccaatTCCTGATCTGTGCGCAGGCTAAAGAAATTATTGGATGAAGATGTGATAGTAAAGGGAATATTATCAGTGATAATACACTGAACTTTTCCATTTTCACCTGAATCCGGATCATTTACGTTGATCATTGCAATAATAGTCTCTGCCTTTGACTCCTCAGATATAATATTAGACATGGAAAGAATGTTAATCGATGGTGTATTATCGTTTATGTCCAACACGTCAATAATTACCTTACATGAGTCAGAAAGTCCTCCCTGATCCTTGGCTTGAATTTCGAGTTGATAAATGCTCGATTTTTCAAAGTCAACCTGCCCGTTTAAAACGACTTCACCACTATATTCGTCGACAATAAACAAATTTGATGAACGATCCACTGTTTTTGACATGTAATATGTTACCCGTCCGTTAGAGCCTTCATCCACGTCAGAGGCGCTCACGGTAATTAATTTAGTTCCTTTAGCTGCATTTTCTGTTAATGAAGCCCTGTACACTTTGTGTGTAAAGACAGGAGCGTTATCATTAGCATCTAGCACAGTAACGTGTATCTGTACAGTACCAGACAGAACCGGTTCACCTCCATCCATGGCTGTTAATGACAAACTaaatgtttcctgtttttctctatCGAGTGGTTTTTGCAAAATCATTTCAAGGCTTTTATCATCGTCTGCTTGATTTTGTAAATCTAACACAAAATGATCTGTCGGTTTAAGTGAGTAGCTCTGAAGTCCGTTTGTACCGACGTCAGCATCCATTGCTCTCTCTAACATGAATCTCGCTCCCGGTGCAGCCGCTTCACTTATTTCAATTCTGATTTCCTCCGTTTGGAAAAATGGCGGATTATCATTAATGTCTGTGATTTCCACAGTTATTGTATACCTTTCCATTGGGCTCTCTAGAATCATCTGTAGATGTAAAGCACACGGAGTCTTTTTTGCACAAAGCGACTCTCgatctattttttctttaatgagaaGCGAGCCCCTGTCTCTGTTCAGTTCTATATATTCCGTGCTGTCTACCGTATAAATGCGCGCTTTCCCAGATTTCAGTCTTTTTATATCCAAACCCAAATCCTGAGCAATATTTCCAACCATCGAGCCTTTCGCCATTTCCTCCGGTATGGAGTAGCTGACCTGCGCGAGCCCAGAGCGAGAAGAAAGGAGGATGAACAACAATACCGTGTGCCACATCACTGCGCCTGCCATTTTCCCGGCGGTACAGAATAATCGCAGAAATAAAATCCTCATTCAGTTTTAAAATCTTTGATATCCGTGCGCATCCACTGAAAATCCACGCTCTGTTTCAGGAAACgtcttttaaagataaatgtTCAACACCGTGTGCGTAAATACTGTCCTACAGCGAAGCCTTTCTGTCTCTGGTCTGAGGTTTGCTAGGGGTGGGTATGGGACATAAACGCGCAAAATTAAAGCTTCCTTGATAAACAGCGGCCCTTTGAGTCAAAATCAAGAATTGCACTTTGATTTAATATaagtttaaaaatgcaaattctaataagaataaataaataattttgattCTTACGTAATTGTCAACAACCTTTTATCAGGcagaaagtttattattttatttttttttaatttaaccaaATGACTCGGAGTTTGCACCAAGAGCTTCTTTAACCTTCTGATTTGTCAGTGTCTTCTAAACATTTCACAGCCTTATTTTATCGAACAATAAATCAGCGTGGATGTTTTCCCCGGAAGTAACGGCGAGGGAGAAAGGGGAGAAAACATATCTACGTAAAACCTGCTACAATCACATGACCTGGAGTTTAAAACAAACGCATTATGGTTTCGGTACTACATGAAGAGTGTCCTGCCAGACAGTATCTGATACTTAATAGAAAGCCGAAAACGCAGTGAGTTCAGTGTGGCGGGTTGTGTCGCTGTCCAGAACGAATGGTTCTgaaactatctatctatcagtaaCTACAGAAAATTTGTCTAAAACGTGACAAACCCCATGTAGGTATTTAGCAATATTATCGTCGATGGAGTTTGTaaactacacacaatacacagagCCACCAAAGCCATCAAACATAGATATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310024 True 2812 lncRNA 0.42 2 1634611 1644162

Neighbor

gene id symbol gene type direction distance location
LOC113524200 NA coding upstream 80922 1552268 ~ 1553689 (+)
LOC113524165 LOC108277141 coding upstream 111465 1512564 ~ 1523146 (+)
tlx3b LOC108276618 coding upstream 173387 1450158 ~ 1461224 (+)
LOC113524161 NA coding upstream 211146 1420371 ~ 1423465 (+)
cldn7b cldn7b,LOC108277307,LOC108444573 coding upstream 225777 1401549 ~ 1408834 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding downstream 168437 1812599 ~ 1826322 (+)
avd LOC108277130 coding downstream 226497 1870659 ~ 1873142 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding downstream 337991 1982153 ~ 2053236 (+)
LOC117599403 NA coding downstream 699499 2343661 ~ 2347385 (+)
smtlb sl,LOC108276625 coding downstream 1006492 2650654 ~ 2653366 (+)
G261638 LOC108276785 non-coding upstream 19010 1600471 ~ 1615601 (+)
G261634 LOC108276785 non-coding upstream 23900 1596762 ~ 1610711 (+)
LOC113524197 npm1a,LOC108277343,LOC108444574,LOC107676031 non-coding upstream 124524 1428150 ~ 1510087 (+)
G261585 NA non-coding upstream 300625 1333782 ~ 1333986 (+)
G261544 NA non-coding upstream 370471 1263307 ~ 1264140 (+)
G261643 LOC108276792,LOC108276799,LOC108276796,LOC108437803,LOC107688304,LOC105905981 non-coding downstream 38057 1682219 ~ 1704174 (+)
G261647 LOC108276799,LOC108276792,LOC108276796,LOC108437803,LOC107586188 non-coding downstream 68375 1712537 ~ 1718736 (+)
G261853 NA non-coding downstream 119676 1763838 ~ 1767984 (+)
G261848 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 non-coding downstream 131328 1775490 ~ 1780559 (+)
G261894 NA non-coding downstream 212490 1856652 ~ 1856853 (+)
ponzr2 LOC108277330 other upstream 215122 1411986 ~ 1419489 (+)
G261503 NA other upstream 397479 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 522333 1101789 ~ 1112278 (+)
G261178 NA other upstream 906886 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 978402 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 1100234 2744396 ~ 2747317 (+)
pcp4a NA other downstream 1151329 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 1472007 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 1609154 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 3433691 5077853 ~ 5080643 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01034694_00000006_00001865 PCDH1GB9 coding CI01034694 null 6 ~ 1979 (-)