si:ch211-266i6.3 (LOC108276750)


Basic Information

Item Value
gene id si:ch211-266i6.3
gene name LOC108276750
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1006914 ~ 1014289 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310051
GGAACACAGCGATGTTCCTCAGACGAAACCCGCCTTCTCCAGCAGCCCGAGTCACATCCTCAACACCACGCTGGACCTGCTGGACGACTCGGACACGGAGCTGCCCACGGAGCCCGAGATCAGGATGGAATCGTTGGTGATAAACTTGTGTGAACGATTAGAGGAGATGGAAACGCCGTCCTCATGCAAGAGCcgTGGAGACGCCGATGCCGAGGTGAAGGTAGAAGACGCCTGAATACGAGATTCTGGAGGAGGGAGAACGGAGAGAGGGAGAACGGAGAGAGGGAGAACG
>XM_034312788.1
ACAGCCAACGACCAATCAGGAAGAAGAACTCCAGCGCCAAAGTCAAATCAGTTTGAACGTTTAGTGTTTGAAAGCAGCGGTGTGAGACTGTcttcagaataataatcataataacaaGAAAAGTTAGATTATTTTGGTTCTTGTATAGTTTTTGGGACGattattaacaaatattatatCCACGAATCTTCAGGAGTCAAGGTGATCGTTTAACCGCATCAgaggaggagtgagtgagtgagtgacggCAAAATGGACACGGCGGTAAAAAAGAGTAATAAGGAAAACTCCAAGCCTGAGACCGGTCCGAAAAAACCCGAGTCCAGAAACGTCACATCGAAACAGAAGCTGGTGAGACCTGCGCCGCTGCGGTCCAAAAACGAGCCGAGGGAAGAAAACGCAGGAGACAAGCCCGAGTCTAAAGCGCAGCTCAAACCATCAAAACCCGCCAACGATTCGGATCCCACGCAGCGGAAAACTCTGAGTCAGGCGTTCCGGACCGAACAAACCCTGAGACACAGGAAACTGGTGCTGGAAACCCAGAAGCCTCCGTCGTCCGTCCCTCCGAAACCCCTCCTCCCCGGGACCTACAAGGGCCGCGTGGTACGGTCCAAAATAGACTGCTTCAGGAAGCCGGCGAGTGGCCAGGAGAAGAAACCTGCCGAGAACAAGCCCAAGGCTGAGACGGCGGTTCGGTCCAAATCCGCCACGACGCTCTCCGCTTCCTCAAGAGCAGGAGTCCAGTCTGGTGTGGCGAGCAGAACGACGTCATGGTCGGACGCACGGTTAAACACGCAGAAGACGGTTCCTCAAAGACGGATACAGACGAAAGCTCCAGCTCAGACAGCTACGATCTCCACCAAACCATCTACTGTCTCCACCAAAGCTTCTACAATCTCCACCAAACCATCCACCATCTCCACCAAACCATCTACTGTCTCCACCATCTACAATCTCCACCAAAGCTTCTACAATCTCCACCAAACCATCCACCATCTCCACCAAACCATCTACTGTCTCCACTCAAGACCACCAACAGTGACATCATTCATCAAGAAGAAGGAACCATCCAAACCTGCTGCAGCTGCTAGCGAGCAAAAACCACAAAAGTCTGTCTCAGGCGCCATCAGCCAATACCGAGTCCGCGTGGAATCCGCCGAGGAGAGACGCCAGGAACACAGCGATGTTCCTCAGACGAAACCCGCCTTCTCCAGCAGCCCGAGTCACATCCTCAACACCACGCTGGACCTGCTGGACGACTCGGACACGGAGCTGCCCACGGAGCCCGAGATCAGGATGGAATCGTTGGTGATAAACTTGTGTGAACGATTAGAGGAGATGGAAACGCCGTCCTCATGCAAGAGCcgtgagTGGAGACGCCGATGCCGAGGTGAAGGTAGAAGACGCCTGAATACGAGATTCTGGAGGAGGGAGAACGGAGAGAGGGAGAACGGAGAGAGGGAGAACGGAGAGACGGATGGAGGGGAGAAGAaggaggaaaaggaggaaggTGGAGCAGGAGACAAGAAAACTTTGAAGATTaagatggaggaagagaagaaactGTTTGaagtggatggagaggaggatggagaggaggatggagaggaggatggagaggagAAGATGGACTCCACACCTGCAGATGTTCTGGATGCGTGCGTCGTGAAGTACAGCGTAAAAACCACTCCGTTTCTGCAAAGTGTGAAGAAGAGGATGGAGGGTGAAATGGCTCCCGGTACTCCTGGCTCTCGCCGTAAAAGTTCCATTAAAGAGCTGAGGTTCCTGACGCCGGTGCGCCGCTCGTCCCGGATCCACAGGAACTCGTCCCGGCTGCCGGGAATGCTGAACGAGCACGACCCCTGCGTGTCCTCGCTGGCCGAGCTCGAGCTGCTGGACGATGCCGACTCCAACGCCTACATCTACAGGAGGAACCCTGCGCTGCTGCAGCACCTCCCTGATCAGCGTCCCGAACCCCAGAGCTCCGAATAAACACGCGGAGTTATCAGAACAGGAAGCACACGGATTTCAACCGCAGTAAcatgcaaatatgcaaatactGAACGTTAACCTGTGGCAGAAAAGACACTGGGCTGATTTGCATATGTAAATAATGTCCCTTTCTATTGGTTCGCTCGCACCTGTAAAAGAAACGCTGATGTTCAGAGTCGACTGAATATGAAAAGATAAACATTAACGCTACACTAAGGGGTTTtggatgggttttttttcttttttttcactaactGAACATGTAATCTAAGGTTTGTTTTTACTCAACATCGCTGAACAACATGAATAACTAAAAACAGATAGAAGTGGTGGAagtttgtaatgtaaaaaatttttttttttgaatactCAAGCAAGTTTTACTTTACACTAAAGAGCCTCTGAAACCAAAATGGAGGTTAGAAATGTTGAAAATATTGTGTTTGTAGATATTTCGAGTGGAGAAAGGTTTTGGTTCTGCAAACACTCACGCAGGAAAAAGAGGTTCAGATGTTTTTACTGCGATTATAATCTAAAAGTTTTATTCTACTAAAGCCTTGTGACATTATAACCTATTTAACAGTatgtgtgattgacaggtgcgTAACCTAGCAACACAAGCTGCTCTCTATGGTCTAACTAACTGCCAGAGGAAAAGTATTAACACTTTAAgttgtattaatattttatccTGCATCATAACCTTCCTGAAGTTGTTACGAATACTGAATACTTTCTCTTCATCAGACTTCATCAGTTATTAGTCGTATTAATCTGACCATAATCATtcatgttgctttttttcccctcctttttctccctccctctttcctcctgatgtttgtttgtctctttctctttcctgtgtATACTTATCCAGTTTTCCACATTAATATTgttcacactgaaacacatgaTTATGTACTTTGGCTTGCAAACTCATCTTCACCTTCGATCTGTCTTTGTAAAGACGAGATTCAGGCACATATTGTGTTGTATGAGGGTTTCTTGAAATAAACTCAGTTCCCTTTTAT

Function

NR:

description
PREDICTED: cytoskeleton-associated protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310051 False 292 lncRNA 0.58 3 1009350 1010742
XM_034312788.1 True 3026 mRNA 0.47 10 1006914 1014289

Neighbor

gene id symbol gene type direction distance location
LOC113524167 thap12 coding downstream 711 999241 ~ 1006203 (-)
si:dkey-250d21.1 LOC108276748,LOC108442106 coding downstream 10119 987090 ~ 996795 (-)
wnt11 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107751408,LOC107747044 coding downstream 46100 940503 ~ 960814 (-)
map6a map6 coding downstream 245843 745853 ~ 761071 (-)
zbtb21 zbtb21 coding downstream 280532 721125 ~ 726382 (-)
foxo1b LOC108277356 coding upstream 38662 1052951 ~ 1081289 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding upstream 67580 1081869 ~ 1090531 (-)
trnat-agu_11 NA coding upstream 81312 1095601 ~ 1095674 (-)
trnas-gcu_6 NA coding upstream 83509 1097798 ~ 1097879 (-)
LOC113524202 NA coding upstream 83888 1098177 ~ 1098309 (-)
G261686 NA non-coding downstream 8613 997641 ~ 998301 (-)
G261355 NA non-coding downstream 131137 657927 ~ 875777 (-)
G261380 NA non-coding downstream 204226 802305 ~ 802688 (-)
G261374 NA non-coding downstream 211604 792912 ~ 795310 (-)
G261309 rad51c non-coding downstream 290773 665414 ~ 716141 (-)
LOC113524153 NA non-coding upstream 218074 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 308891 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 314282 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 320451 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 345850 1360139 ~ 1360361 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 690589 301010 ~ 316325 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other upstream 1518 1015807 ~ 1112393 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 251163 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 761272 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1665386 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1698153 2712442 ~ 2724473 (-)

Expression


Co-expression Network