LOC117599327


Basic Information

Item Value
gene id LOC117599327
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 981406 ~ 1032535 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310056
gtagtttttttttttttttttttttttaaattagagatCTAATTAGAATTGTACACTTTAAGTATAatctaattgttttattttgtttcgtTGTCTTATTTTTatcttgtgtgtgatgtggactAAGAAAGAGGACTGCCTACAGGGACCAATgtcttgccaaaaaaaaaaaaaagcagaaaaagaaagaaagaaaaaaacatgcccTAGCCAGGGCTCTAATGCTTTTGTGCCTTTATGCAAAACCTTACCCTGACTCTTGGAACACAAGAACTAAGTTTGTCTGCAAGAACGCTTTCAAGACAAGCTTTTTGGAAGCTTCCCAGCATCTTCAGGAACttttacgatttttttttttttttttaaatcatgtacatcctataaaaagaaataacaacCCAGACATGTTCAGTCCAGTTACACTCATTTAGTCAAATAACCTGTGGGTTTCGAATCACCTGAATCATGTCACGGTCATCCACACGGCACAAATGCTGAAATGCTATGTTTCATTACGTGTCAAAAACAAGTTTCATTTGTTTGCAGTTTGACTTGGATGCATTGGTTTCTGTAAACACTTTCTCCCAAAAATCCTTCTCATGGAAAGAAggattcaaatatatatatttga
>XM_034312383.1
CGTGACGACTCTTCTGAGGCTTGTTGCTGTGCTACCTAGCATTAGCATGGAGTGTGATCTGATGAAGACCACTCTTAACTCGTTGAGGAGCTTGATCGGGAATGACTACGGCAGCACCAGCAAGACCAACACGGTAATGCTTCTTATGCATCGCCCCATGCTGAGGACTTTGGAGCAAGTGATCGACAAATGTATGGAACTTGATGCAAAGAGCCATGACTTCCTTTCTCcgGTGAAGGAGACTCTCGGTGTAATGAAAACGGATAGCGAGGTGGATGGGGTTCCTTCAGAGGAAAAGGTCAATACTACCAGCTCTGGGGTTTCAGAGATAATAAATGGCATGGTTCCAATCATCGCACAAGACCAGCCCACAACTACAGCTCAGTGCGACAGTGGAGAGATAAGCACTTCTACACTAGATGGTACCACTGCAACTTCAAAGGATAGCGCCATGGAAATAAATGCGTCTAATGGAAAAGCTGAGATACAAGAATCATCTCCAATCAGCACAGATGGTCAATCAGCAGCTACACATCTAAATGACGCTGAAATTAGTTCATCCACAATGAGCATGTCTGAAAATGCACCAGAAGAACAGGATGTTCCCAAAGAGCACAAAGCAACAGCCCAAGGTGTAACCGCAGAGCTACAAAATGGAAATGTGGAGCTTGTAACGGAAGTGGCAGCCCAAAGTATCACCACTGAGCCTGTTGCAGCATCCAAGGATGTCCCCATGGTGCTTGAAGAACCGGGTGCAAAAGTGGCGGCTGAGGATGTCATCGCAGGGTCAGAAGTGGCAGAGCCAGTCGCCGCAGAACCAATCACAGCACCCGAGGATGCCGCCATGGAAGTCACGGCAGTGGCGCAGGATGCTGCCACAAAGCCTGGAGTCGCTATAGAACCTGTAACATCATCACAGGATGTCATTCCAGAGTCAGGTACAGCAGCTGTGGATGTCTCCATGGAGCATACAGAACCTGTAACCGGAATGGTAGCCCAGGATGTTGTTACTGAGCAAAGTGTCAACGTGGAACCTGTAACCGAAGTGGCAGCTCAGGTTGCGACCACAGAGCCTGTTACAGCATCCAAGGATGTCCCAAAAGAGTCTATGGTAGTGGCAGAGGATGTCGCTGCAGAGCCTGTTAGAGGAGACAAAGACACTACTGTGGAACCCGAAGCAGCAGAAAAGGGTGTCACAAGTGTGTCAGAAGTGTCAGCTGATCCTGGCATCACAGAGCCTGTTGCAGACGCAGAGGATGTCACCAAGAGTACTGAAACCCAGAGTGTCGCTGCCAAGGAGCCGTCACCATCAATCCATGGTATCAGTACAAACCCAGTCGCAGTACCCCAGGAGATCACTGAGGAGCTTGTTGCAACTGGACAAGATGTCACTACAAAGCATGATGCCCAGGGAATCACCAAAGAGCCTGGTGTGAGAGTCCAGAGTGCTCAGGGTGTCACCACAGAGCCTGTAACATCACCCCAAAGCATGACCATGAAGCCAGATGCAGCAGTTGAGCATATCGCAAAAGCACAGTATGCCACCACCAAGCCCTTAGCAACAGCCCAAAATGAAGCCACAGATCATGGAACAGCATCCGGAAACTCAACAACGGAACCCCAAAAAGCTCAAGGTGTCACCCCCAGTAACGAATCCACAACAGCCCGTGGAGTGACTGTGAAACCTGTAACGTTGCCTCAGGATACAAGCAGTGAGACCAGCATAGCTCAGGGTGTCACCTCTGTGACTGTATCAGAAGCCCAGAATCTTTCCAGAGCAGAAGTACAAGAGGTCACCACACAACCTGTAACAACGGGACATGACGTCACCTTGGAAGATCAGAGTGTCTCCAAAGAGCCAATAACAGCATCCCCAGATGCCACGAATCCCACAGCAACAGTGCAGTGTGGGGAGTCTGTTACAGCTGAGCAAGAGGTCACCACGAAGAACGTGCCAGCAGCCGAGGATGTCGCCATGGACACCACTGAAGCAGATCAGAGTGTTGCCTTACAATCCACAGTACCAGCCAAAGGTATTGTTCCTACAGAGTCGACAGCTGAGCACGTCCCTATGGAGCTTGATGCAGCATCAGAAAAAATGACCACAGAACCTGCAGAAACAGTCCAGGATGTTGTGATGGAGAGCCAAGATGAATCCAAAGGAGTGGCCCGGGACGTCACCATGGAACCTATCGCAGAAATCCATGACGTCCCCATGGATCCCACCGAAGACCTCAAAGCGGAAACTGAAGATACTGACCTAAAGGCTGATGTTCAAGATGTAACCGATAAAGTCATGGCACCTGCTCAGAATGGGACTTGCGAGTCCAAACTACTTTCTTCTGATGGCGTAGATAAGGCCGTACCTGCCAATAAAGTCGGTGATGTCCAGATTACCACAGCGACAAAGAGTGCAACAAGTGATGCAAACAACTCTACAGCAGCCGAAGTCACGCATATGACTGTTCAAGATGATCTCGATCAATCCTATGCAATAGCTCAATATGGCATGGATCCCTCCAAAGCAGTAGCACAAGCAGCGGGTGAAGATGGCACCGAACCCCACAAGGGGGTCTTGTCGTTCTACAGCACTCCTGCTCAAGAGGCATTTTTCAGCGAAATTCAAAATGCAAAGTTCTTTTCTATTATATGTGAACAGCAAATAGAGATAGAAGGACATACGTATATTCCCGTAGGGATCTGTTACCTGGAGAAACGCAAGACGCCATGCGAGGATGTATTGGCTTACATCCCGCTTGACCAAGACATCACCGTCTTTGTGGattctatgacagcagctctgtccGAGAAGTGGGGTTTGAACTTGGCCTTCTGTCGGGGGCAAAGCCTGCTGACGGTAGGTGCTGCAGGTGCGCAAGTGAGAGCAGCGGCATCGTTGTTGTCTCAGAGGTACCCGCATGCTGTCCGCACTTTCAGCTCCTCCGTGTCCCTGAACACATGGCTGGCCAAATCGTGTATTATCTCTGAGATAGCGGACAGCTACACGTGGGTGGAGAGGATGCTGCAGTGGGTGACGGAGGATGAAAAGAAACGGGCTGTATTATACAGAATGGTCGCGTCCCTGTTCCAGCACGACGCGGTGAAGCACAGTGACCTGACTGATAGGCTTAGCAGAAGCCAATGGGAGAGGAGCCATGACACTCTGGATCTTACCGTAGAAGTTCTGGAAGCCATCATGCTCAGTTTGAACGACGTAAAGGAAAACCATGACATCCAGGCAGAAAGAACACAGGCTGGTGACTTCCTCATCATCCTGCAGAACTTTGAGTTCATCTTGACGCTTGTGATCATGAAAAACGTCCTGGGTCCGACAAAAAGTTTAAGCCAGAATCTCCAGAGCCAACCTCTGGATGTGTTTCAAGCTGTGAATAGTCTGTCTGAAGTACTTTCTTCACTGAGTGATATGAAAACCAACATTGACGCACACCTTCAAAGCTGGTACCAAGAAGCAGTGGCGTTCGCCTCCAAGTTACAGATCAGCGTCGACCACACTTCACAAGAGTGCTTGATCATTTACTGTAGAGACATCGTCAGCAAAGGAGCGATAGATCACTCCATTTGCGAGATCACCGAGCTTTTCTCAGACCCCGCTCTGTTGGCCGTGCGCTGCTTGCAGGTTGTGCCTTATGTCATATCCAAGACGGAAGGATGCTGCACAGACTCTGACCTTTTCAGGGTGTACCAGGACGATCTCCCAGACTCGAGCTCTCTGCAGGCGGAGCTTCTAAAGTGGCGGGAGAAGTGGTTGGACGCCGACGCGGCTCAACAGCCTCTTCCCGCTGGTCTTCTAGACACGCTCAGTGCCACAGACTCCGAGTCCTTTCCCAACATTGAGACACTTCTCAGGCTCCTCGTGGTCTTGCCCTGTTTCAGAAAAGAGGACTTGATCAGACAGGGAAAGAAGAGTCTCGTTGAGTTCAACCAACAGAGGTCTTTACTCGAGCTGTATCCTCTATAGAGCAGTAACCGTCAACCTGTCAACCCTCAACTGCCCCCTAAAACTAGCTTTCCATTAATTAGGGTGTCGTATACTGCTGAAGTCCTCAGTGTGTTACTCACTGTATCCCTGGTTACAGCTGATCAAATCTGAGCGTAGGtttcagtagttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310056 False 631 lncRNA 0.33 2 981406 1032535
XM_034312383.1 True 4136 mRNA 0.50 4 982016 986422

Neighbor

gene id symbol gene type direction distance location
wnt11 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107751408,LOC107747044 coding downstream 20592 940503 ~ 960814 (-)
map6a map6 coding downstream 220335 745853 ~ 761071 (-)
zbtb21 zbtb21 coding downstream 255024 721125 ~ 726382 (-)
rad51c rad51c coding downstream 265264 710086 ~ 716142 (-)
ppm1e ppm1e coding downstream 273360 662678 ~ 708046 (-)
foxo1b LOC108277356 coding upstream 20416 1052951 ~ 1081289 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding upstream 49334 1081869 ~ 1090531 (-)
trnat-agu_11 NA coding upstream 63066 1095601 ~ 1095674 (-)
trnas-gcu_6 NA coding upstream 65263 1097798 ~ 1097879 (-)
LOC113524202 NA coding upstream 65642 1098177 ~ 1098309 (-)
G261355 NA non-coding downstream 105629 657927 ~ 875777 (-)
G261380 NA non-coding downstream 178718 802305 ~ 802688 (-)
G261374 NA non-coding downstream 186096 792912 ~ 795310 (-)
G261309 rad51c non-coding downstream 265265 665414 ~ 716141 (-)
G261341 NA non-coding downstream 351016 629837 ~ 630390 (-)
LOC113524153 NA non-coding upstream 199828 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 290645 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 296036 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 302205 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 327604 1360139 ~ 1360361 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 665081 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 232917 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 743026 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1647140 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1679907 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1933120 2965655 ~ 2968182 (-)

Expression


Co-expression Network