G261676


Basic Information

Item Value
gene id G261676
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 969913 ~ 1054023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310064
GTCTTAACAAAATTAACGCTCTGCTTTTATAACCTGATGCGCTTAAAATTggctttttaacacttttaatgaGAGTTTTCTGGTAAAGTGATATTTTATGATTGTATATTTTATGGTGTTTTCACTcttcactttttgttttttgggtcAGTCTTTTCCAAACCTTTCTTAATCTTAAACCAGCCACAGGACATGGGACATTCAGCCTGGGAGTTTCCATGAgagataaaaatgataatattatGTTTCAGTAAACACCGAAAGGTCTGACTGGAAAGAAATCGTAAGGAACGTTTggtgtagaaatcataaaataagcTTCTGATTTTGGAATTAAATCACACAGTGTTTAGTTTTAgagtttatttttcttgttgcAGACTCTCTTAAGCTCAAGCCGAACTAAAAATCACTTAAAGTCAGTTTTAaactcactttctttctctcttaaaCGTGATTGGACGTTGGATTTTTCCTGAATTCTCATTTCAAGGCTCGTCTTGTGATAAAATGACGTGTGAGCTCCTTCTGCTGGCCCTCAAGTTCACGTGTgtttaatttacacaaaaacCGAATCGTTAATaggacaaagtttttaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310064 True 618 lncRNA 0.33 2 969913 1054023

Neighbor

gene id symbol gene type direction distance location
wnt11 wnt11,wnt11r,LOC107686210,LOC107589704,LOC107751408,LOC107747044 coding downstream 9099 940503 ~ 960814 (-)
map6a map6 coding downstream 208842 745853 ~ 761071 (-)
zbtb21 zbtb21 coding downstream 243531 721125 ~ 726382 (-)
rad51c rad51c coding downstream 253771 710086 ~ 716142 (-)
ppm1e ppm1e coding downstream 261867 662678 ~ 708046 (-)
ap4m1 ap4m1,LOC107702797,LOC107720677,LOC107554303,LOC107742404 coding upstream 27846 1081869 ~ 1090531 (-)
trnat-agu_11 NA coding upstream 41578 1095601 ~ 1095674 (-)
trnas-gcu_6 NA coding upstream 43775 1097798 ~ 1097879 (-)
LOC113524202 NA coding upstream 44154 1098177 ~ 1098309 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding upstream 74556 1128579 ~ 1134162 (-)
G261355 NA non-coding downstream 94136 657927 ~ 875777 (-)
G261380 NA non-coding downstream 167225 802305 ~ 802688 (-)
G261374 NA non-coding downstream 174603 792912 ~ 795310 (-)
G261309 rad51c non-coding downstream 253772 665414 ~ 716141 (-)
G261341 NA non-coding downstream 339523 629837 ~ 630390 (-)
LOC113524153 NA non-coding upstream 178340 1232363 ~ 1235521 (-)
G261748 NA non-coding upstream 269157 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 274548 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 280717 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 306116 1360139 ~ 1360361 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 653588 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 211429 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 721538 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1625652 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1658419 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1911632 2965655 ~ 2968182 (-)

Expression


Co-expression Network