LOC113524153


Basic Information

Item Value
gene id LOC113524153
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1232363 ~ 1235521 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310125
ttatttttttatcgtTGCATACAAAGTATCTGAAACTTCTGTGATCTGATCTGATTTGGAGCACTTTCAAGGCTGCTAAGTTATTGtcatatagattttttttattcttttgatttgtgttgtttttttgttttgtttttttttgcaacctTGGGAAGTTTTATTACAAATGAATGTATTCCTAAAATGTGTAACGGAGCGTCACAACGAGTCTGGCGTCTTCACTCACTTCAAAGTCTGACGGGCTTTCGAcaagaaaaacagacattttcagAAGGAAATGTCCTGCTGTTCTTCCAGAACTTTCTCCAGCAGTGAACCTCGGGCCAATCAGAGCCAAGGACGGGCACCGTGTAGCAGtagaagacttttttttgttttgttttgtttttttttgaaaggtgttttgttttttttgttgttgttgtttttcttcttctttttgccCTAATCTTCAGTAAAGACAGAGACTTCTGAAGCCTGGAACtgaggattattattattatcggtACTTGATCTAGAGGAAAGGAaacatatttcacttttttctttttctcgttCTGGAGTATATTTttgcaaaagaagaagaaaaataagaaaagataTGTAAGAAGCAGCAATAAGGACAAGAACATGTGTGAGGACATGCATTCTCCTGGAGAAGTGGATTTGAGCCTCATACTGCAtcctggagggaaaaaaaaaaaaaaaaaggaccttCAGTCTCATGAAATGGACTCAAGTCTCCTACATCGTCCCTGAGAAGTGGACTCGTGAGGTGGAGTCTGGTGGACTCACATCATCTACAGCGTTCCAAGTCCTCAAGGAGTGGACTCGTACAGCGTCCACCATCTTGGAGAAGTGGACTTCATTCTGGAGAAGAACGCGAGGTGGACTCGAGAAACGGACTCGAGTCGTCTTTGTCATATGAAGGAAAATTCAACGCTGTGGCTGAAAACAGAAGCAGATGAGCTCCTGGAGAACATTAGGGTGTGTTAAACCCTTGGATTTGGATGGAGAACTTGTAAAGAACAACACAGTGGAAGTTCCTTTACCTAGTGGACTAGAACTGCAGAGAGAGACTGCTGCAGGTCCTCGAGGAAGAGGAACGAGTGAAACCACCGAGTTTCAGCGTGAGGACAGTGTCCCTGTGATCGGAGTCCGGTTTCTACCGGAAGGAAGACGTCACGATCCGTCTGAGGCTTCgacacactgaactgaatccTCTCGCCTTCTCACACGCTGTACTTTCTCTATTTTTAAGGCGTGTGCCGATAATCGGTTAGTCAATATATCACGATACTCAGTATACGCAAGACATTAGCGCTGTTCCATTTAGCAAAGCCGAGACGCTAGTAAACTAACGTGACTGCGCGCTAGCAGCGCTGCTGTACGAAGAGGAAGCCGAGGCCGGTGTACGGCGATCAGAACAGCTACAGGATAGAATTTTTGGCAAAATTCAAAATATCGTAATCATACATAGAAAAATGGTGTATCGGCACATGCCAACTATTTTCCTCCTTCCTCCCCActtatacttttctttttttactttaaatttcCTCTTCTTGGTCATGTGATCTATAAGAGCGGAGCTTAAGTTAAACTAGATCATCATGACGATGACATCACAATATTTTATCTTGCTAACAAAATTGGTGCCTGTTTTTAATGAGGAAATGCAGTTAACgcaacattagctagcttgcttgAAAACAtggtgattatttttaatttcacacgATACTAACGTTCTCAGAGTGCTACCTTCACGTAGCTAGCTACTCAAGCTGACAAATGATGTTAAATACGATATCTTACGAGACGATCGGATCACCTTAAGCTCCGCCCtttttgtgtatataatgtaaattttctttatttttccaaacaATTTTCCTCTTGTTTTCGTTGCCATGCCTTAAACTGTACAGTGGACAATTTTATCTCGACTTGCTAGCTCACGCGAGTGTGCAGCAACAATCCGGACGCAGACACGCCCTCAGCTGTGGGACATTTCCACTCGGCTCTGTAAATACCGTTTCCATGCTACGACAGTTTTAAGGTATTATCGAAGTTTGCGAGTCGTTTTAGCAGAAAAGGACGTTAGCCCCGCCCATGCTCCATCCCTCGCTCCACCAGCTACGGCAGACGAGCGGACACGGAGGGCGGGGCGAGTGGAGTTTTTGCTTTGAGAACAAAAAACTAtgttaaacagaaaataaagtttttaaaggTTGAAGCCGTTTCCTGCTTGGATGATTTTGGTT
>TU310126
ttatttttttatcgtTGCATACAAAGTATCTGAAACTTCTGTGATCTGATCTGATTTGGAGCACTTTCAAGGCTGCTAAGTTATTGtcatatagattttttttattcttttgatttgtgttgtttttttgttttgtttttttttgcaacctTGGGAAGTTTTATTACAAATGAATGTATTCCTAAAATGTGTAACGGAGCGTCACAACGAGTCTGGCGTCTTCACTCACTTCAAAGTCTGACGGGCTTTCGAcaagaaaaacagacattttcagAAGGAAATGTCCTGCTGTTCTTCCAGAACTTTCTCCAGCAGTGAACCTCGGGCCAATCAGAGCCAAGGACGGGCACCGTGTAGCAGtagaagacttttttttgttttgttttgtttttttttgaaaggtgttttgttttttttgttgttgttgtttttcttcttctttttgccCTAATCTTCAGTAAAGACAGAGACTTCTGAAGCCTGGAACtgaggattattattattatcggtACTTGATCTAGAGGAAAGGAaacatatttcacttttttctttttctcgttCTGGAGTATATTTttgcaaaagaagaagaaaaataagaaaagataTGTAAGAAGCAGCAATAAGGACAAGAACATGTGTGAGGACATGCATTCTCCTGGAGAAGTGGATTTGAGCCTCATACTGCAtcctggagggaaaaaaaaaaaaaaaaaggaccttCAGTCTCATGAAATGGACTCAAGTCTCCTACATCGTCCCTGAGAAGTGGACTCGTGAGGTGGAGTCTGGTGGACTCACATCATCTACAGCGTTCCAAGTCCTCAAGGAGTGGACTCGTACAGCGTCCACCATCTTGGAGAAGTGGACTTCATTCTGGAGAAGAACGCGAGGTGGACTCGAGAAACGGACTCGAGTCGTCTTTGTCATATGAAGGAAAATTCAACGCTGTGGCTGAAAACAGAAGCAGATGAGCTCCTGGAGAACATTAGGGTGTGTTAAACCCTTGGATTTGGATGGAGAACTTGTAAAGAACAACACAGTGGAAGTTCCTTTACCTAGTGGACTAGAACTGCAGAGAGAGACTGCTGCAGGTCCTCGAGGAAGAGGAACGAGTGAAACCACCGAGTTTCAGCGTGAGGACAGTGTCCCTGTGATCGGAGTCCGGTTTCTACCGGAAGGAAGACGTCACGATCCGTCTGAGGCTTCgacacactgaactgaatccTCTCGCCTTCTCACACGCTGTACTTTCTCTATTTTTAAGGCGTGTGCCGATAATCGGTTAGTCAATATATCACGATACTCAGTATACGCAAGACATTAGCGCTGTTCCATTTAGCAAAGCCGAGACGCTAGTAAACTAACGTGACTGCGCGCTAGCAGCGCTGCTGTACGAAGAGGAAGCCGAGGCCGGTGTACGGCGATCAGAACAGCTACAGGATAGAATTTTTGGCAAAATTCAAAATATCGTAATCATACATAGAAAAATGGTGTATCGGCACATGCCAACTATTTTCCTCCTTCCTCCCCActtatacttttctttttttactttaaatttcCTCTTCTTGGTCATGTGATCTATAAGAGCGGAGCTTAAGTTAAACTAGATCATCATGACGATGACATCACAATATTTTATCTTGCTAACAAAATTGGTGCCTGTTTTTAATGAGGAAATGCAGTTAACgcaacattagctagcttgcttgAAAACAtggtgattatttttaatttcacacgATACTAACGTTCTCAGAGTGCTACCTTCACGTAGCTAGCTACTCAAGCTGACAAATGATGTTAAATACGATATCTTACGAGACGATCGGATCACCTTAAGCTCCGCCCtttttgtgtatataatgtaaattttctttatttttccaaacaATTTTCCTCTTGTTTTCGTTGCCATGCCTTAAACTGTACAGTGGACAATTTTATCTCGACTTGCTAGCTCACGCGAGTGTGCAGCAACAATCCGGACGCAGACACGCCCTCAGCTGTGGGACATTTCCACTCGGCTCTGTAAATACCGTTTCCATGCTACGACAGTTTTAAGGTATTATCGAAGTTTGCGAGTCGTTTTAGCAGAAAAGGACGTTAGCCCCGCCCATGCTCCATCCCTCGCTCCACCAGCTACGGCAGACGAGCGGACACGGAGGGCGGGGCGAGTGGAGTTTTTGCTTTGAGAA
>TU310127
TTCAGTAAAGACAGAGACTTCTGAAGCCTGGAACtgaggattattattattatcggtACTTGATCTAGAGGAAAGGAaacatatttcacttttttctttttctcgttCTGGAGTATATTTttgcaaaagaagaagaaaaataagaaaagataTGTAAGAAGCAGCAATAAGGACAAGAACATGTGTGAGGACATGCATTCTCCTGGAGAAGTGGATTTGAGCCTCATACTGCAtcctggagggaaaaaaaaaaaaaaaaaggaccttCAGTCTCATGAAATGGACTCAAGTCTCCTACATCGTCCCTGAGAAGTGGACTCGTGAGGTGGAGTCTGGTGGACTCACATCATCTACAGCGTTCCAAGTCCTCAAGGAGTGGACTCGTACAGCGTCCACCATCTTGGAGAAGTGGACTTCATTCTGGAGAAGAACGCGAGGTGGACTCGAGAAACGGACTCGAGTCGTCTTTGTCATATGAAGGAAAATTCAACGCTGTGGCTGAAAACAGAAGCAGATGAGCTCCTGGAGAACATTAGGGTGTGTTAAACCCTTGGATTTGGATGGAGAACTTGTAAAGAACAACACAGTGGAAGTTCCTTTACCTAGTGGACTAGAACTGCAGAGAGAGACTGCTGCAGGTCCTCGAGGAAGAGGAACGAGTGAAACCACCGAGTTTCAGCGTGAGGACAGTGTCCCTGTGATCGGAGTCCGGTTTCTACCGGAAGGAAGACGTCACGATCCGTCTGAGGCTTCgacacactgaactgaatccTCTCGCCTTCTCACACGCTGTACTTTCTCTATTTTTAAGGCGTGTGCCGATAATCGGTTAGTCAATATATCACGATACTCAGTATACGCAAGACATTAGCGCTGTTCCATTTAGCAAAGCCGAGACGCTAGTAAACTAACGTGACTGCGCGCTAGCAGCGCTGCTGTACGAAGAGGAAGCCGAGGCCGGTGTACGGCGATCAGAACAGCTACAGGATAGAATTTTTGGCAAAATTCAAAATATCGTAATCATACATAGAAAAATGGTGTATCGGCACATGCCAACTATTTTCCTCCTTCCTCCCCActtatacttttctttttttactttaaatttcCTCTTCTTGGTCATGTGATCTATAAGAGCGGAGCTTAAGTTAAACTAGATCATCATGACGATGACATCACAATATTTTATCTTGCTAACAAAATTGGTGCCTGTTTTTAATGAGGAAATGCAGTTAACgcaacattagctagcttgcttgAAAACAtggtgattatttttaatttcacacgATACTAACGTTCTCAGAGTGCTACCTTCACGTAGCTAGCTACTCAAGCTGACAAATGATGTTAAATACGATATCTTACGAGACGATCGGATCACCTTAAGCTCCGCCCtttttgtgtatataatgtaaattttctttatttttccaaacaATTTTCCTCTTGTTTTCGTTGCCATGCCTTAAACTGTACAGTGGACAATTTTATCTCGACTTGCTAGCTCACGCGAGTGTGCAGCAACAATCCGGACGCAGACACGCCCTCAGCTGTGGGACATTTCCACTCGGCTCTGTAAATACCGTTTCCATGCTACGACAGTTTTAAGGTATTATCGAAGTTTGCGAGTCGTTTTAGCAGAAAAGGACGTTAGCCCCGCCCATGCTCCATCCCTCGCTCCACCAGCTACGGCAGACGAGCGGACACGGAGGGCGGGGCGAGTGGAGTTTTTGCTTTGAGAA
>XR_003402509.2
CATtgctgtttaagaaaaaaaaaaaaaaaaaaaaaagaatgatggatttatttttttatcgtTGCATACAAAGTATCTGAAACTTCTGTGATCTGATCTGATTTGGAGCACTTTCAAGGCTGCTAAGTTATTGtcatatagattttttttattcttttgatttgtgttgtttttttgttttgtttttttttgcaacctTGGGAAGTTTTATTACAAATGAATGTATTCCTAAAATGTGTAACGGAGCGTCACAACGAGTCTGGCGTCTTCACTCACTTCAAAGTCTGACGGGCTTTCGAcaagaaaaacagacattttcagAAGGAAATGTCCTGCTGTTCTTCCAGAACTTTCTCCAGCAGTGAACCTCGGGCCAATCAGAGCCAAGGACGGGCACCGTGTAGCAGtagaagacttttttttgttttgttttgtttttttttgaaaggtgttttgttttttttgttgttgttgtttttcttcttctttttgccCTAATCTTCAGTAAAGACAGAGACTTCTGAAGCCTGGAACtgaggattattattattatcggtACTTGATCTAGAGGAAAGGAaacatatttcacttttttctttttctcgttCTGGAGTATATTTttgcaaaagaagaagaaaaataagaaaagataTGTAAGAAGCAGCAATAAGGACAAGAACATGTGTGAGGACATGCATTCTCCTGGAGAAGTGGATTTGAGCCTCATACTGCAtcctggagggaaaaaaaaaaaaaaaaaggaccttCAGTCTCATGAAATGGACTCAAGTCTCCTACATCGTCCCTGAGAAGTGGACTCGTGAGGTGGAGTCTGGTGGACTCACATCATCTACAGCGTTCCAAGTCCTCAAGGAGTGGACTCGTACAGCGTCCACCATCTTGGAGAAGTGGACTTCATTCTGGAGAAGAACGCGAGGTGGACTCGAGAAACGGACTCGAGTCGTCTTTGTCATATGAAGGAAAATTCAACGCTGTGGCTGAAAACAGAAGCAGATGAGCTCCTGGAGAACATTAGGGTGTGTTAAACCCTTGGATTTGGATGGAGAACTTGTAAAGAACAACACAGTGGAAGTTCCTTTACCTAGTGGACTAGAACTGCAGAGAGAGACTGCTGCAGGTCCTCGAGGAAGAGGAACGAGTGAAACCACCGAGTTTCAGCGTGAGGACAGTGTCCCTGTGATCGGAGTCCGGTTTCTACCGGAAGGAAGACGTCACGATCCGTCTGAGGCTTCgacacactgaactgaatccTCTCGCCTTCTCACACGCTGTACTTTCTCTATTTTTAAGGCGTGTGCCGATAATCGGTTAGTCAATATATCACGATACTCAGTATACGCAAGACATTAGCGCTGTTCCATTTAGCAAAGCCGAGACGCTAGTAAACTAACGTGACTGCGCGCTAGCAGCGCTGCTGTACGAAGAGGAAGCCGAGGCCGGTGTACGGCGATCAGAACAGCTACAGGATAGAATTTTTGGCAAAATTCAAAATATCGTAATCATACATAGAAAAATGGTGTATCGGCACATGCCAACTATTTTCCTCCTTCCTCCCCActtatacttttctttttttactttaaatttcCTCTTCTTGGTCATGTGATCTATAAGAGCGGAGCTTAAGTTAAACTAGATCATCATGACGATGACATCACAATATTTTATCTTGCTAACAAAATTGGTGCCTGTTTTTAATGAGGAAATGCAGTTAACgcaacattagctagcttgcttgAAAACAtggtgattatttttaatttcacacgATACTAACGTTCTCAGAGTGCTACCTTCACGTAGCTAGCTACTCAAGCTGACAAATGATGTTAAATACGATATCTTACGAGACGATCGGATCACCTTAAGCTCCGCCCtttttgtgtatataatgtaaattttctttatttttccaaacaATTTTCCTCTTGTTTTCGTTGCCATGCCTTAAACTGTACAGTGGACAATTTTATCTCGACTTGCTAGCTCACGCGAGTGTGCAGCAACAATCCGGACGCAGACACGCCCTCAGCTGTGGGACATTTCCACTCGGCTCTGTAAATACCGTTTCCATGCTACGACAGTTTTAAGGTATTATCGAAGTTTGCGAGTCGTTTTAGCAGAAAAGGACGTTAGCCCCGCCCATGCTCCATCCCTCGCTCCACCAGCTACGGCAGACGAGCGGACACGGAGGGCGGGGCGAGTGGAGTTTTTGCTTTGAGAACAAAAAACTAtgttaaacagaaaataaagtttttaaaggTTGAAGCCGTTTCCTGCTTGGATGATTTTGGTTGCATGTTTACAGACATTAAAGTCTAAGAGAGAcgttgtgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310125 False 2270 lncRNA 0.42 2 1232404 1235474
TU310126 False 2198 lncRNA 0.42 2 1232476 1235474
TU310127 False 1745 lncRNA 0.44 2 1232476 1235021
XR_003402509.2 True 2358 lncRNA 0.41 2 1232363 1235521

Neighbor

gene id symbol gene type direction distance location
efnb3a LOC108277042 coding downstream 1488 1203832 ~ 1230875 (-)
kdm6bb kdm6b,LOC108277160,LOC105902372 coding downstream 73180 1138879 ~ 1159183 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding downstream 98201 1128579 ~ 1134162 (-)
LOC113524202 NA coding downstream 134054 1098177 ~ 1098309 (-)
trnas-gcu_6 NA coding downstream 134484 1097798 ~ 1097879 (-)
gigyf1b gigyf1,LOC108277040,LOC108443343 coding upstream 20 1235541 ~ 1260050 (-)
LOC117599374 NA coding upstream 101139 1336660 ~ 1337281 (-)
npm1a npm1a,LOC108277343,LOC108444574,LOC107676031 coding upstream 230035 1465556 ~ 1471706 (-)
kcnip1b LOC108277344,LOC108444575,LOC103024145,LOC107742366,LOC107552061,LOC107676032,LOC102788752,LOC107720696,LOC101158298,LOC107586147,LOC103363037,LOC101476742 coding upstream 237070 1472591 ~ 1496371 (-)
hrh2b LOC108276662 coding upstream 292464 1527985 ~ 1530147 (-)
G261676 NA non-coding downstream 178340 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 234062 997641 ~ 998301 (-)
G261355 NA non-coding downstream 356586 657927 ~ 875777 (-)
G261380 NA non-coding downstream 429675 802305 ~ 802688 (-)
G261374 NA non-coding downstream 437053 792912 ~ 795310 (-)
G261748 NA non-coding upstream 87659 1323180 ~ 1323407 (-)
G261753 NA non-coding upstream 93050 1328571 ~ 1328776 (-)
G261758 NA non-coding upstream 99219 1334740 ~ 1334940 (-)
G261759 NA non-coding upstream 124618 1360139 ~ 1360361 (-)
G261760 NA non-coding upstream 124949 1360470 ~ 1360968 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 119970 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 199828 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 218074 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 916038 301010 ~ 316325 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other upstream 29931 1265452 ~ 1410939 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 540040 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1444154 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1476921 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1730134 2965655 ~ 2968182 (-)

Expression


Co-expression Network