G261758


Basic Information

Item Value
gene id G261758
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1334740 ~ 1334940 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310172
GATGTGGTTCACATTTACATGCCGGTCCGGTCTGGTGAGCCGGCGCTCCGTCAAAGGCGGGATTCATGTCGGTGCACAAGGCGAGCTCTGTTTCAGTGCACACTCTAGTGTAGTGCTCCAATTATCACCTCGGTGAAGTGTTCACTACTCAGCGACGCCGCGTCCTGTTCACCACGACCATCACTCACCACTTAAACCGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310172 True 201 lncRNA 0.55 1 1334740 1334940

Neighbor

gene id symbol gene type direction distance location
gigyf1b gigyf1,LOC108277040,LOC108443343 coding downstream 74690 1235541 ~ 1260050 (-)
efnb3a LOC108277042 coding downstream 103865 1203832 ~ 1230875 (-)
kdm6bb kdm6b,LOC108277160,LOC105902372 coding downstream 175557 1138879 ~ 1159183 (-)
tmem88a tmem88,LOC108276534,LOC106608829,LOC106525123 coding downstream 200578 1128579 ~ 1134162 (-)
LOC113524202 NA coding downstream 236431 1098177 ~ 1098309 (-)
LOC117599374 NA coding upstream 1720 1336660 ~ 1337281 (-)
npm1a npm1a,LOC108277343,LOC108444574,LOC107676031 coding upstream 130616 1465556 ~ 1471706 (-)
kcnip1b LOC108277344,LOC108444575,LOC103024145,LOC107742366,LOC107552061,LOC107676032,LOC102788752,LOC107720696,LOC101158298,LOC107586147,LOC103363037,LOC101476742 coding upstream 137651 1472591 ~ 1496371 (-)
hrh2b LOC108276662 coding upstream 193045 1527985 ~ 1530147 (-)
LOC113524157 LOC108276611 coding upstream 205934 1540874 ~ 1554115 (-)
G261753 NA non-coding downstream 5964 1328571 ~ 1328776 (-)
G261748 NA non-coding downstream 11333 1323180 ~ 1323407 (-)
LOC113524153 NA non-coding downstream 99219 1232363 ~ 1235521 (-)
G261676 NA non-coding downstream 280717 969913 ~ 1054023 (-)
G261686 NA non-coding downstream 336439 997641 ~ 998301 (-)
G261759 NA non-coding upstream 25199 1360139 ~ 1360361 (-)
G261760 NA non-coding upstream 25530 1360470 ~ 1360968 (-)
G261779 NA non-coding upstream 84243 1419183 ~ 1419765 (-)
G261780 NA non-coding upstream 85031 1419971 ~ 1420206 (-)
G261784 NA non-coding upstream 88957 1423897 ~ 1424349 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 222347 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 302205 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 320451 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 1018415 301010 ~ 316325 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other upstream 440621 1775561 ~ 1780407 (-)
si:ch73-1a9.3 NA other upstream 1344735 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 1377502 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1630715 2965655 ~ 2968182 (-)
akap1a NA other upstream 2232479 3567419 ~ 3627300 (-)

Expression


Co-expression Network