G261868 (LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185)


Basic Information

Item Value
gene id G261868
gene name LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 1775561 ~ 1780407 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310379
AAATATTGATTATGAAGAAACCCCTGCGattgaattgagaattcagGCTCAGGACAAGGGCCATTCTCCAAAACACACTAACTGTAAAGTGTTAATTGAAGTCGTGGATGTGAATGACAATGCACCAGAGATATCAGTTACTCTGCTCATCAGCTCCATAAGCGAGGACATCAAACCTGGCACAGATGTTGCATTAATCACTGTATCAGATAAAGATAGTGGAACGAATGGGAAAGTAGATTGTAAAATTATAGCACCGAGTCCTTTTAAATTACAGTCATCATACAAGAACTATTACTCTCTTGTTGTGAATGAAGCTCTGGACAGAGAGCGAGTCTCACAATATAATGTCACAGTTGTGGCTAATGATGAGGGAACTCCTTCTCTCTCGAGCAGTAACGTTATAACAGTTCATGTCTCTGATGTGAATGATAACGCGCCTTTGTTTCCTGCACCGGTGATAAACATTAGTGTGAAAGAGAATAGTCCAGTTGGAGGGCTGTTGGCATCACTAACGGCGCGAGACTCAGACATCGGTGAAAATGCCCTTGTTTCGTATTCTTTAATTGATGCAGAGAGCAGCAGAGTGTCAAATCTGATGAACATTAACTCACACACCGGTGAACTGTACAGCCTGAAGTCTTTCGATTACGAAGAAACGAAAAGACTTGAGTTTAAAGTTCAAGCCACTGACTCTGGTGTCCTTCCACTAAGTAGTAACgtgactgtaaatgtttttatcctGGATGAGAATGACAACAGTCCAGTTTTTCTCCCTCCTTATTCTGAACCTGGATCAGTGAACACTGAGAACATTCCCTACTCTGCTGAAGCGGGCTATTTTGTGGCTAAAGTCAGAGCTGTAGACGCTGATTCAGGTTATAACGCACTATTATCTTATCACATAAGTGAAGCAAAGGGAACGAATCTCTTCCGAATCGGAACCAGCACAGGAGAAATAAGGACTAAAAGACGAATGAGTGACAATGACTTAAAAACTCACCCGCTTATCATTAGTGTCTCGGATAATGGAGAACCTTCACTGTCCACAACTATGAGTATTGAAGTTGTGGTTGTGGAAAATATGGACAGGCTGCAGCCTTCATTAAGACAAGTGCCAGTACAGGAGGAGAATTTCTCTAATCTGAATCTCTATCTGCTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310379 True 1162 TUCP 0.42 2 1775561 1780407

Neighbor

gene id symbol gene type direction distance location
LOC117599354 LOC108276665,LOC108277183,LOC108277182,LOC108277185,LOC108276666 coding downstream 1593 1770856 ~ 1773968 (-)
LOC117599355 LOC108276665,LOC108277183,LOC108277182,LOC108277185,LOC108276666 coding downstream 8594 1760344 ~ 1766967 (-)
LOC117599370 LOC108276799 coding downstream 57127 1709075 ~ 1718434 (-)
LOC117599358 LOC108276799 coding downstream 71373 1702877 ~ 1704188 (-)
LOC117599352 LOC108276792,LOC108276799,LOC108276796,LOC108437803 coding downstream 79639 1681542 ~ 1695922 (-)
LOC113544779 NA coding upstream 2088 1782495 ~ 1791794 (-)
zgc:123181 NA coding upstream 7069 1787476 ~ 1788444 (-)
LOC113544752 LOC108276668,LOC108276667 coding upstream 11936 1792343 ~ 1798733 (-)
LOC113544777 LOC108276596 coding upstream 19912 1800319 ~ 1807910 (-)
fbxw11b fbxw11,fbxw11b,LOC108277126,LOC105905987,LOC106603254,LOC107687420,LOC106568099 coding upstream 49680 1830087 ~ 1846831 (-)
G261809 NA non-coding downstream 158537 1534239 ~ 1617024 (-)
LOC117599322 NA non-coding downstream 324971 1442759 ~ 1450590 (-)
G261784 NA non-coding downstream 351212 1423897 ~ 1424349 (-)
G261780 NA non-coding downstream 355355 1419971 ~ 1420206 (-)
G261779 NA non-coding downstream 355796 1419183 ~ 1419765 (-)
G261893 NA non-coding upstream 75688 1856095 ~ 1856308 (-)
LOC117599368 NA non-coding upstream 87397 1867804 ~ 1870920 (-)
G262033 NA non-coding upstream 269628 2050035 ~ 2093935 (-)
LOC113544895 NA non-coding upstream 369246 2149653 ~ 2156552 (-)
G262144 NA non-coding upstream 410765 2191172 ~ 2191383 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 364622 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 663168 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 743026 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 761272 1006914 ~ 1014289 (-)
fhl1b fhl1b,LOC108444522,LOC107718794,LOC107701105,LOC107693928,LOC107548848 other downstream 1459236 301010 ~ 316325 (-)
si:ch73-1a9.3 NA other upstream 899268 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other upstream 932035 2712442 ~ 2724473 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 1185248 2965655 ~ 2968182 (-)
akap1a NA other upstream 1787012 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 2272582 4052989 ~ 4066383 (-)

Expression


Co-expression Network