G262201


Basic Information

Item Value
gene id G262201
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2303340 ~ 2303551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310731
ATGTAAGTAATCTTTAACATAAAAACTAATGTGCAGTATGGAAGGTGTGATGCCTATACTTTATTTCTAACACAGTGCTGCTTGAAAACACAGAAGAAAGGTGCTAACTGCTTGGCTCAAAGTTTGGGCTTGGTGATGTGTCATTTGTGAGCAAGAGTCTTTTAAGTTTTTGCTgaaacagtgctgtgtgtgtgaacagtgaaaatttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310731 True 212 lncRNA 0.36 1 2303340 2303551

Neighbor

gene id symbol gene type direction distance location
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 250104 1982153 ~ 2053236 (+)
avd LOC108277130 coding upstream 430198 1870659 ~ 1873142 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding upstream 477018 1812599 ~ 1826322 (+)
LOC113524200 NA coding upstream 749651 1552268 ~ 1553689 (+)
LOC113524165 LOC108277141 coding upstream 780194 1512564 ~ 1523146 (+)
LOC117599403 NA coding downstream 40110 2343661 ~ 2347385 (+)
smtlb sl,LOC108276625 coding downstream 347103 2650654 ~ 2653366 (+)
LOC113544866 glb1l2,LOC108433266 coding downstream 394693 2698244 ~ 2711113 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding downstream 417799 2721350 ~ 2728418 (+)
igsf5a NA coding downstream 464001 2767552 ~ 2782425 (+)
G262103 NA non-coding upstream 85494 2217486 ~ 2217846 (+)
G262102 NA non-coding upstream 86155 2216960 ~ 2217185 (+)
G262095 NA non-coding upstream 105265 2197870 ~ 2198075 (+)
G261960 NA non-coding upstream 267875 2035252 ~ 2035465 (+)
G261894 NA non-coding upstream 446487 1856652 ~ 1856853 (+)
LOC117599402 NA non-coding downstream 148466 2452017 ~ 2471013 (+)
G262369 NA non-coding downstream 201528 2505079 ~ 2505296 (+)
G262377 NA non-coding downstream 233806 2537357 ~ 2554404 (+)
G262395 foxred1 non-coding downstream 335657 2639208 ~ 2665470 (+)
G262407 NA non-coding downstream 367172 2670723 ~ 2672573 (+)
ponzr2 LOC108277330 other upstream 883851 1411986 ~ 1419489 (+)
G261503 NA other upstream 1066208 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1191062 1101789 ~ 1112278 (+)
G261178 NA other upstream 1575615 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 1647131 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 440845 2744396 ~ 2747317 (+)
pcp4a NA other downstream 491940 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 812618 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 949765 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2774302 5077853 ~ 5080643 (+)

Expression


Co-expression Network