G262395 (foxred1)


Basic Information

Item Value
gene id G262395
gene name foxred1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2639208 ~ 2665470 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310937
TAAAAAACAAaaaaaaaaaaaaaaaaaaaagctgggtttgattttttttttttgccctgtaCATGATCTCTGAGGATTTCTGTGTTTAATGCAGGCTGCAGCTTTGGTACACAATACCCTGATTATTTATCGATCTCATTACAGCACTCATTTCAAAGTTCCTGGTTATTAATTTGATTTCTTTTCCACATGGTGTCGATGTGAGCAGCTGTCAGGTCAGATTCCTGTCACGGGTATTAACATATTAAAGATTCTGATTCTCCTTCTCTGTGCTCACACGATGTTCCTCTCCAGCATGGGCTCCTGGCAGAGGATGCGCTTGACGTCGAAGGCGCTCAGGTCGATGGTCTTAAACCCTCCGTCCAGGATGAGCTCGGCCACGGCGCGGCCCACGGCGGGAGACTGCTGCAGCCCGTGTCCGCTGAAACCCGTTGCGAAGTACATGTTGTTGACCAGCGGGTGCAGACCCACGATGCCGTTCTGGTCGAACGTGTTGTAGTCGTAAAACCCCGCCCATGCTCCTGTca

Function

symbol description
foxred1 Predicted to enable oxidoreductase activity. Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 19. Orthologous to human FOXRED1 (FAD dependent oxidoreductase domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310937 True 527 lncRNA 0.48 2 2639208 2665470

Neighbor

gene id symbol gene type direction distance location
LOC117599403 NA coding upstream 291823 2343661 ~ 2347385 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 585972 1982153 ~ 2053236 (+)
avd LOC108277130 coding upstream 766066 1870659 ~ 1873142 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding upstream 812886 1812599 ~ 1826322 (+)
LOC113524200 NA coding upstream 1085519 1552268 ~ 1553689 (+)
LOC113544866 glb1l2,LOC108433266 coding downstream 32774 2698244 ~ 2711113 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding downstream 55880 2721350 ~ 2728418 (+)
igsf5a NA coding downstream 102082 2767552 ~ 2782425 (+)
gdpd5a LOC108277122,LOC108435822 coding downstream 364804 3030274 ~ 3062807 (+)
usp25 usp25,LOC107653727 coding downstream 484996 3150466 ~ 3178938 (+)
G262377 NA non-coding upstream 84804 2537357 ~ 2554404 (+)
G262369 NA non-coding upstream 133912 2505079 ~ 2505296 (+)
LOC117599402 NA non-coding upstream 168195 2452017 ~ 2471013 (+)
G262201 NA non-coding upstream 335657 2303340 ~ 2303551 (+)
G262103 NA non-coding upstream 421362 2217486 ~ 2217846 (+)
G262407 NA non-coding downstream 5253 2670723 ~ 2672573 (+)
G262408 NA non-coding downstream 8071 2673541 ~ 2673761 (+)
G262411 stt3a,LOC107758586 non-coding downstream 15473 2680943 ~ 2681715 (+)
G262412 NA non-coding downstream 19325 2684795 ~ 2686474 (+)
G262440 NA non-coding downstream 91137 2756607 ~ 2792408 (+)
ponzr2 LOC108277330 other upstream 1219719 1411986 ~ 1419489 (+)
G261503 NA other upstream 1402076 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1526930 1101789 ~ 1112278 (+)
G261178 NA other upstream 1911483 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 1982999 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 78926 2744396 ~ 2747317 (+)
pcp4a NA other downstream 130021 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 450699 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 587846 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2412383 5077853 ~ 5080643 (+)

Expression


Co-expression Network