G262411 (stt3a,LOC107758586)


Basic Information

Item Value
gene id G262411
gene name stt3a,LOC107758586
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2680943 ~ 2681715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310960
ATggggcagagaaaaaaaatatatttgtttacaaAATCTATGATGTTTAAAACTCTCGCATTGCAAATGCAGCTGATTTGGGAGGAATAATTAACTATCTATACTggaaaactattttttttagaagcGTTTTAGAGTCTATCTGGATATAAGGATAatgatttatgttttattaatgtgatCTGGAGGTgttttacatcttatattttcctaaaaacagtgtaaacactTTGCATGAAAGAGTTCATTATGAACCAATCAAGAAttgttaatctgtttttttccctcacccACATATTCACCCATGAACAGAGGTGGAGATTAGTGGTGGAGCTCAGCTCTAAGTAATACGACGTAAGAACCATCCGGACAGCGCAGAACCGTAACACGACATGTGCGTGATTTGTCTACCTGGAATCCCACGAAGGAGATCTGCATGGACAGGATGGTGCCCAGGCAGTACACGGTGCAGTAAGCCACATAGATGCGGTGAGAGAATCGTCCGGTGAGCATCAGCACCAGTACGTGCAGAGGGATCAGGTTGATGAGGAACACGTAGCCTCCCCACGAGGACACCTGCAGACGTtgCATGTAGAAGTACGCCAGGGCGCAGATGGACGACCAGTAAATCGAACCCGTCTTCACCGCCTTGATCCACATGTAGTACGTCAGCAACATGCAGAAAA

Function

symbol description
stt3a Predicted to enable dolichyl-diphosphooligosaccharide-protein glycotransferase activity. Predicted to be involved in post-translational protein modification and protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial mesoderm; hatching gland; musculature system; notochord; and otic placode. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iw. Orthologous to human STT3A (STT3 oligosaccharyltransferase complex catalytic subunit A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310960 True 686 lncRNA 0.43 2 2680943 2681715

Neighbor

gene id symbol gene type direction distance location
smtlb sl,LOC108276625 coding upstream 27577 2650654 ~ 2653366 (+)
LOC117599403 NA coding upstream 333558 2343661 ~ 2347385 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 627707 1982153 ~ 2053236 (+)
avd LOC108277130 coding upstream 807801 1870659 ~ 1873142 (+)
fgf18b LOC108276546,LOC108437818,LOC103034963,LOC107742373,LOC107687415,LOC107552074 coding upstream 854621 1812599 ~ 1826322 (+)
LOC113544866 glb1l2,LOC108433266 coding downstream 16529 2698244 ~ 2711113 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding downstream 39635 2721350 ~ 2728418 (+)
igsf5a NA coding downstream 85837 2767552 ~ 2782425 (+)
gdpd5a LOC108277122,LOC108435822 coding downstream 348559 3030274 ~ 3062807 (+)
usp25 usp25,LOC107653727 coding downstream 468751 3150466 ~ 3178938 (+)
G262408 NA non-coding upstream 7182 2673541 ~ 2673761 (+)
G262407 NA non-coding upstream 8370 2670723 ~ 2672573 (+)
G262395 foxred1 non-coding upstream 15473 2639208 ~ 2665470 (+)
G262377 NA non-coding upstream 126539 2537357 ~ 2554404 (+)
G262369 NA non-coding upstream 175647 2505079 ~ 2505296 (+)
G262412 NA non-coding downstream 3080 2684795 ~ 2686474 (+)
G262440 NA non-coding downstream 74892 2756607 ~ 2792408 (+)
G262637 NA non-coding downstream 304760 2986475 ~ 2986675 (+)
G262662 NA non-coding downstream 384441 3066156 ~ 3067730 (+)
G262663 NA non-coding downstream 385471 3067186 ~ 3068928 (+)
ponzr2 LOC108277330 other upstream 1261454 1411986 ~ 1419489 (+)
G261503 NA other upstream 1443811 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1568665 1101789 ~ 1112278 (+)
G261178 NA other upstream 1953218 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 2024734 603726 ~ 656209 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other downstream 62681 2744396 ~ 2747317 (+)
pcp4a NA other downstream 113776 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 434454 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 571601 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2396138 5077853 ~ 5080643 (+)

Expression


Co-expression Network