rps25 (rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519)


Basic Information

Item Value
gene id rps25
gene name rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2744396 ~ 2747317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU310987
CGGAAGCCGAAGAAGCGCGTGGACAAAGCGGACGTGGCTGTGTTACAGCTTCCTTTCTCTCGCGCAGCTCGCCGAAAGCTTCATCATGCCACCCAAGGACAGCAAGCAGAAGAAGGATACGTCCAAAGCCAAAAAGGACAAGGATCCCGTCAATAAATCTGGAGGCAAAGCAAAAAAAGTAGAAGTGGTCCAAAGGGAAGGTGAGGGACAAGCTCAACAACCTGGTCCTCTTCGACAAGGCGACTTACGACAAGCTGTACAAAGAAGTCCCTAACTACAAGCTCATCACGCCCGCTGTGGTGTCCGAGAGGCTGAAGATCAGAGGCTCCCTGGCCAGGGCGGCCCTCCTCGAACTGCTCAGCAAAGgtATGATCAAGCTTGTGTCAAAGCACAGGGCTCAGGTGATCTACACACGCAACACCAAGGGCACTGATGAGGGAGCACCGGAGAAGGATGCGTAAAGAGGTTCCTCTCTGGCTCCTCAATGTGTTTTGTAtagttaaataaacaacaaaaacagatttcTGGTCTTGTTTGAGTTTGTCAAGTGTTTGTGTTGTAAAATTTTGG
>XM_034312856.1
TGAGCTCAAACGCCGTGACGCCTAACTGTCACCGGAAGCCGAAGAAGCGCGTGGACAAAGCGGACGTGGCTGTGTTACAGCTTCCTTTCTCTCGCGCAGCTCGCCGAAAGCTTCATCATGCCACCCAAGGACAGCAAGCAGAAGAAGGATACGTCCAAAGCCAAAAAGGACAAGGATCCCGTCAATAAATCTGGAGGCAAAGCAAAAAAGAAgAAGTGGTCCAAAGGGAAGGTGAGGGACAAGCTCAACAACCTGGTCCTCTTCGACAAGGCGACTTACGACAAGCTGTACAAAGAAGTCCCTAACTACAAGCTCATCACGCCCGCTGTGGTGTCCGAGAGGCTGAAGATCAGAGGCTCCCTGGCCAGGGCGGCCCTCCTCGAACTGCTCAGCAAAGgtATGATCAAGCTTGTGTCAAAGCACAGGGCTCAGGTGATCTACACACGCAACACCAAGGGCACTGATGAGGGAGCACCGGAGAAGGATGCGTAAAGAGGTTCCTCTCTGGCTCCTCAATGTGTTTTGTAtagttaaataaacaacaaaaacaga

Function

symbol description
rps25 Predicted to be a structural constituent of ribosome. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS25 (ribosomal protein S25).

NR:

description
40S ribosomal protein S25

GO:

id name namespace
GO:0005840 ribosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU310987 True 570 lncRNA 0.50 5 2744428 2747317
XM_034312856.1 False 552 mRNA 0.52 5 2744396 2747268

Neighbor

gene id symbol gene type direction distance location
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding upstream 15978 2721350 ~ 2728418 (+)
LOC113544866 glb1l2,LOC108433266 coding upstream 33283 2698244 ~ 2711113 (+)
smtlb sl,LOC108276625 coding upstream 91030 2650654 ~ 2653366 (+)
LOC117599403 NA coding upstream 397011 2343661 ~ 2347385 (+)
pcdh1a LOC108276538,LOC108437809,LOC107678039,LOC107708655,LOC107720713,LOC107564544 coding upstream 691160 1982153 ~ 2053236 (+)
igsf5a NA coding downstream 20235 2767552 ~ 2782425 (+)
gdpd5a LOC108277122,LOC108435822 coding downstream 282957 3030274 ~ 3062807 (+)
usp25 usp25,LOC107653727 coding downstream 403149 3150466 ~ 3178938 (+)
LOC113544811 NA coding downstream 570789 3318106 ~ 3325774 (+)
LOC113544950 NA coding downstream 903632 3650949 ~ 3654016 (+)
G262412 NA non-coding upstream 57922 2684795 ~ 2686474 (+)
G262411 stt3a,LOC107758586 non-coding upstream 62681 2680943 ~ 2681715 (+)
G262408 NA non-coding upstream 70635 2673541 ~ 2673761 (+)
G262407 NA non-coding upstream 71823 2670723 ~ 2672573 (+)
G262395 foxred1 non-coding upstream 78926 2639208 ~ 2665470 (+)
G262440 NA non-coding downstream 9290 2756607 ~ 2792408 (+)
G262637 NA non-coding downstream 239158 2986475 ~ 2986675 (+)
G262662 NA non-coding downstream 318839 3066156 ~ 3067730 (+)
G262663 NA non-coding downstream 319869 3067186 ~ 3068928 (+)
G262741 NA non-coding downstream 442035 3189352 ~ 3194482 (+)
ponzr2 LOC108277330 other upstream 1324907 1411986 ~ 1419489 (+)
G261503 NA other upstream 1507264 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1632118 1101789 ~ 1112278 (+)
G261178 NA other upstream 2016671 725827 ~ 727725 (+)
trim37 trim37,LOC107691657 other upstream 2088187 603726 ~ 656209 (+)
pcp4a NA other downstream 48174 2795491 ~ 2817263 (+)
nrip1b LOC108277259 other downstream 368852 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 505999 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2330536 5077853 ~ 5080643 (+)
G264336 NA other downstream 3261483 6008800 ~ 6011902 (+)

Expression


Co-expression Network