si:ch73-1a9.3


Basic Information

Item Value
gene id si:ch73-1a9.3
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2679675 ~ 2760185 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311013
GATGATGAAGTGAATAGGGGGGAAAGAAGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacatacacacacattgcgCATGGCGTTTACAAAGACAGATGGACAACTTGCCCAAATGACTAACATTCCATTGGCTCaatgagggattttttttttgtttgtttgaatgtgtgtaacCTGTTATGTATGTGTGCGCAGCGGGGAGGGGTGCGAATCACTCATCGTTTTCTTGTTTATAATGAGGCAGATTACTTAGGACGTTTGTAAGCTGTGTTCTGTATGTTAATTCTTGTACCAATTATGCTTAATAAACCTACTTTGTAGTACTGGAGCTCTCCATGTCAGGCCTGTGCATCATCACGTGTTTTGATTTGTTGTCTTTCCTGTGATAGCGCCACAATAGATCTATATAGCAGCTGTGAAACGATCTTTGACTTTATATGCAGCGTGTAATGGTACCTTGTCCGGATGTGGTCAAGATTGAATCCTTGGCAAAGCTAAAATGCATGGACATGCTAAAGCTTGGCCACCTTTTCAGGCCGGTCCGATGATCGAGTGTAAGATCTGGCAAACTGTACAGCACTCGTACCAGCAGTAGCAATATACACGTGCAACTACAAATGTACAGTTTCTTTCAGATCATTGTTTATAGATGTATCTCTGTGTATTGTTTGATTAAAGCGAGCcaataaaaaattgtttgtgACACCTGTTTCTCCCGCTTTTATGTTCAACACATTGGGTTC
>TU311014
GATGATGAAGTGAATAGGGGGGAAAGAAGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacaCAAAGACAGATGGACAACTTGCCCAAATGACTAACATTCCATTGGCTCaatgagggattttttttttgtttgtttgaatgtgtgtaacCTGTTATGTATGTGTGCGCAGCGGGGAGGGGTGCGAATCACTCATCGTTTTCTTGTTTATAATGAGGCAGATTACTTAGGACGTTTGTAAGCTGTGTTCTGTATGTTAATTCTTGTACCAATTATGCTTAATAAACCTACTTTGTAGTACTGGAGCTCTCCATGTCAGGCCTGTGCATCATCACGTGTTTTGATTTGTTGTCTTTCCTGTGATAGCGCCACAATAGATCTATATAGCAGCTGTGAAACGATCTTTGACTTTATATGCAGCGTGTAATGGTACCTTGTCCGGATGTGGTCAAGATTGAATCCTTGGCAAAGCTAAAATGCATGGACATGCTAAAGCTTGGCCACCTTTTCAGGCCGGTCCGATGATCGAGTGTAAGATCTGGCAAACTGTACAGCACTCGTACCAGCAGTAGCAATATACACGTGCAACTACAAATGTACAGTTTCTTTCAGATCATTGTTTATAGATGTATCTCTGTGTATTGTTTGATTAAAGCGAGCcaataaaaaattgtttgtgACACCTGTTTCTCCCGCTTTTATGTTCAACACATTGGGTTC
>TU311015
GATGATGAAGTGAATAGGGGGGAAAGAAGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacacacacacacacacacacacacacacacacacacacacccac
>TU311018
GATGATGAAGTGAATAGGGGGGAAAGAAGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacacacacacacacacacacacacacacacacacacccacacac
>TU311019
GATGATGAAGTGAATAGGGGGGAAAGAAGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacacacacacacacacacacacacacacacacacacacccacacac
>TU311021
GATGATGAAGTGAATAGGGGGGAAAGAAGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacacacacacacacacacacacacacacacacacacacaaaaacaaaacagaacatacctttacatttaaaacatgacgctcacttaataataataataataataataatacattttatttataaagcactttacattttaaagaaaatctcaaagtgctacagAAAAGAGACATAATAGTCTAAagcaattaaaaccag
>TU311022
GATGATGAAGTGAATAGGGGGGAAAGAAGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacaAAGACAGATGGACAACTTGCCCAAATGACTAACATTCCATTGGCTCaatgagggattttttttttgtttgtttgaatgtgtgtaacCTGTTATGTATGTGTGCGCAGCGGGGAGGGGTGCGAATCACTCATCGTTTTCTTGTTTATAATGAGGCAGATTACTTAGGACGTTTGTAAGCTGTGTTCTGTATGTTAATTCTTGTACCAATTATGCTTAATAAACCTACTTTGTAGTACTGGAGCTCTCCATGTCAGGCCTGTGCATCATCACGTGTTTTGATTTGTTGTCTTTCCTGTGATAGCGCCACAATAGATCTATATAGCAGCTGTGAAACGATCTTTGACTTTATATGCAGCGTGTAATGGTACCTTGTCCGGATGTGGTCAAGATTGAATCCTTGGCAAAGCTAAAATGCATGGACATGCTAAAGCTTGGCCACCTTTTCAGGCCGGTCCGATGATCGAGTGTAAGATCTGGCAAACTGTACAGCACTCGTACCAGCAGTAGCAATATACACGTGCAACTACAAATGTACAGTTTCTTTCAGATCATTGTTTATAGATGTATCTCTGTGTATTGTTTGATTAAAGCGAGCcaataaaaaattgtttgtgACAaaaaaaaacaaaaaa
>XM_026943988.2
AGGGGGGAGAATCCAATCCGGTTTGAGCTAGTTTGTGTTTCGATGGGACGTTAACGTCTTCCTGCGCTGAAACCTGTGTGTCTTTTTTATCGAGCTAACTAAGCACTGTTGTTAGCTATTTTTAGTCTCTTTGGCTTGcatactttttttcccctccttgcAGCCTATTCCtatcttttttgtgtttaaataacaCCTCAAAACCAGCCATGCCCAAAAGGAGCAAAgcGAACAATGACACCGAAGCCAGTGAGCCCAAAAGGAGATCGGCGAGATTGGTAAACAAACCGGCACCTCCTAAGGCAGAGCCGAAGCCAAAGGCAAAGAAGGCACCTGCCAAACCCAAAAAGACCAAGGAGCCCAAGGAGGACAAGCCCAAGGAcgaggagaagaaagaggaagtcCCTGCCGAGAATGGCGAGGCAAAGGCCGATGATGAGGCACCAGCAACAGAAGAGACGGAGAAGAAGGACGACGCAGCAGAATAACATCTTGTCTCGAACCAGTGCTCCCTGTACCTCTCTTCTTGTACAATTCAGGGGAATATTTTTATCTACTATTTTCTAAAGGCAGTTTTTTTAGTAGTTTGATTGTAGAGACACATTTTTTATGAAAGCTACAATGCATTTTGAGGGGGATTTCATCCCATGCCACATTTGTACATCCAGAACAGTTATTGTCTGTCAGTTCCTCTTTTCACAGTGGGAAGGAGTTACGCCAtgggcacatacacacacatacacacacattgcgCATGGCGTTTACAAAGACAGATGGACAACTTGCCCAAATGACTAACATTCCATTGGCTCaatgagggattttttttttgtttgtttgaatgtgtgtaacCTGTTATGTATGTGTGCGCAGCGGGGAGGGGTGCGAATCACTCATCGTTTTCTTGTTTATAATGAGGCAGATTACTTAGGACGTTTGTAAGCTGTGTTCTGTATGTTAATTCTTGTACCAATTATGCTTAATAAACCTACTTTGTAGTACTGGAGCTCTCCATGTCAGGCCTGTGCATCATCACGTGTTTTGATTTGTTGTCTTTCCTGTGATAGCGCCACAATAGATCTATATAGCAGCTGTGAAACGATCTTTGACTTTATATGCAGCGTGTAATGGTACCTTGTCCGGATGTGGTCAAGATTGAATCCTTGGCAAAGCTAAAATGCATGGACATGCTAAAGCTTGGCCACCTTTTCAGGCCGGTCCGATGATCGAGTGTAAGATCTGGCAAACTGTACAGCACTCGTACCAGCAGTAGCAATATACACGTGCAACTACAAATGTACAGTTTCTTTCAGATCATTGTTTATAGATGTATCTCTGTGTATTGTTTGATTAAAGCGAGCcaataaaaaattgtttgtgACA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU311013 True 1448 TUCP 0.43 6 2757032 2760185
TU311014 False 1422 TUCP 0.43 7 2757032 2760185
TU311015 False 806 TUCP 0.46 7 2739156 2760185
TU311018 False 806 TUCP 0.46 7 2679675 2760185
TU311019 False 808 TUCP 0.46 7 2679675 2760185
TU311021 False 962 lncRNA 0.42 7 2695855 2760185
TU311022 False 1397 TUCP 0.43 8 2756533 2760185
XM_026943988.2 False 1383 mRNA 0.43 6 2757070 2760158

Neighbor

gene id symbol gene type direction distance location
foxred1 foxred1,LOC107758617 coding downstream 7115 2664422 ~ 2672560 (-)
dcps dcps coding downstream 15834 2659939 ~ 2663841 (-)
kcnj1b kcnj1,LOC108433247 coding downstream 21794 2655781 ~ 2657881 (-)
LOC117599364 kcnj1,LOC108433247 coding downstream 24811 2654404 ~ 2654864 (-)
kirrel3a kirrel3,kirrel3a,LOC107730946,LOC107758686,LOC107565265 coding downstream 227643 2329405 ~ 2452032 (-)
dscama dscama,LOC108277288,LOC108433273,LOC107653721,LOC107679528,LOC107758699 coding upstream 63051 2823236 ~ 2902050 (-)
tmprss2 tmprss2 coding upstream 160374 2920559 ~ 2926895 (-)
acat1 acat1,LOC107653722,LOC107565255,LOC107758700,LOC107583377,LOC107679529,LOC107743429 coding upstream 178295 2938480 ~ 2944058 (-)
mmp30 LOC108276913 coding upstream 185399 2945584 ~ 2950217 (-)
LOC113544739 LOC108276914 coding upstream 191911 2952096 ~ 2963087 (-)
G262381 NA non-coding downstream 124494 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 174867 2504583 ~ 2504808 (-)
G262144 NA non-coding downstream 488292 2191172 ~ 2191383 (-)
LOC113544895 NA non-coding downstream 523123 2149653 ~ 2156552 (-)
G262033 NA non-coding downstream 585740 2050035 ~ 2093935 (-)
G262572 NA non-coding upstream 94869 2855054 ~ 2855667 (-)
G262598 NA non-coding upstream 153479 2913664 ~ 2913871 (-)
G262646 NA non-coding upstream 226270 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 264676 3024861 ~ 3025212 (-)
G262728 NA non-coding upstream 380842 3141027 ~ 3141668 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 899268 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1268736 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1567282 1015807 ~ 1112393 (-)
LOC117599327 NA other downstream 1647140 981406 ~ 1032535 (-)
si:ch211-266i6.3 LOC108276750 other downstream 1665386 1006914 ~ 1014289 (-)
LOC113544717 LOC108276916,LOC108276915 other upstream 205470 2965655 ~ 2968182 (-)
akap1a NA other upstream 807234 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1292804 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 2156305 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 2273683 5033868 ~ 5157309 (-)

Expression


Co-expression Network