LOC113544717 (LOC108276916,LOC108276915)


Basic Information

Item Value
gene id LOC113544717
gene name LOC108276916,LOC108276915
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 2965655 ~ 2968182 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311217
AGATCATGGTGATGGCTCCCCGTTTGATGGACCTAATGGTGTCTTGGCTCATGCATTTGGCCCCGCTTCTGGCCTCGGCGGAGATACCCATTTTGATGACGATGAGACCTTCACTTTCAAATCTAATGGATACAACTTGTTCTTGGTGGCTGCCCATGAATTTGGACACGCCCTGGGCCTTGATCATTCCCGTGATCCCGGAGCTCTCATGAATGCAAGGTACACCTACAGAGATGTTGACAGCTTCGTTCTTCCTCAAGATGATGTCGGTAAAATTCAGGCTCTCTATGGCTCAAACCCTGACAAACCCGATAAACCCGAGCCCACAGCTCCACCCACTCCTAATGCCTGTGACCCCAATCTGGTCCTGGATGCTGTTACAACCCTGCGTGGAGAGATGTACTTCTTCAAGAATAAatttttctgGCGCCGCCAATCTCAGATCCCTCAAACTGAACAATATCTGATAAAGACCTTCTGGCCTGAGCTTCCTGATAATATCGATGCTGCCTTTGAAAATCCATCAG
>XM_026943635.2
AAATCCAAACTGCATCAGTTTCTTGGAAAAGAAGTAAGATGAAGACTTACTACCTGTTGTGTGTCCTCATTGGCCTGGTGTTCAGGGTTCACTCAGGTCCAGTACTGCCATCTACTGTGAAGGGTGATGAACAGTTTGCAAAGAAGTACTTGAAAAAATTAGCCAACATGGAAGAGGAGAACAAGCCATCTTTTGGGCGCAAGGTCAGTGAGACGAGCTTGAAGCTGGGTGAGATGCAGCAGTTTTTCAGGTTAAACGTGACAGGATCTCTGGATGCTGAAATGCTGGAGATGATGAAGGAGCCTCACTGCAGAGTTCCAGACGTGGCTGCAGGCAAAGCCAAAAATTACAAATGGTCTACAAACAAGTTGACCTACAGGATTGAGAATTACACTCCCGACATGTCTGTGGCTGAAGTGGATGACTCTATTGAGAAAGCACTGCAAGTCTGGGCTCGTGTCACACCTCTGAGGTTCACCCGCATCTACAGCGGTGTAGCCGACATCATGATCACGTTTACTGTTGGAGATCATGGTGATGGCTCCCCGTTTGATGGACCTAATGGTGTCTTGGCTCATGCATTTGGCCCCGCTTCTGGCCTCGGCGGAGATACCCATTTTGATGACGATGAGACCTTCACTTTCAAATCTAATGGATACAACTTGTTCTTGGTGGCTGCCCATGAATTTGGACACGCCCTGGGCCTTGATCATTCCCGTGATCCCGGAGCTCTCATGAATGCAAGGTACACCTACAGAGATGTTGACAGCTTCGTTCTTCCTCAAGATGATGTCGGTAAAATTCAGGCTCTCTATGGCTCAAACCCTGACAAACCCGATAAACCCGAGCCCACAGCTCCACCCACTCCTAATGCCTGTGACCCCAATCTGGTCCTGGATGCTGTTACAACCCTGCGTGGAGAGATGTACTTCTTCAAGAATAAatttttctgGCGCCGCCAATCTCAGATCCCTCAAACTGAACAATATCTGATAAAGACCTTCTGGCCTGAGCTTCCTGATAATATCGATGCTGCCTTTGAAAATCCATCAGCTGATTTGATATACATCTTTAAAAGTCAGAAGGTCTGGGCTCTCAGTGGTTATGACGTCGTGAATCACATGAATATCAGTAGCTTCAGCTTGCCAGCTAAAGTGAAGAAAATTAACGCTGCACTTTATGATGATACTGGAAAGACATTGTTCTTTGTTGGTAAATCATACTACAGCTATGACACAAACAACAAGAAGATGGACAAGGGTTACCCTAAACTGGTGGAAGAAAGATTCCCTGAAATCACAGGAAAGGTTACTGCAGCCTTCCAGTACAGTGGTTTCACCTACCTCTTCAATGGAAGAAACATATTCGAGTTTAGCGATTCAACACTGATGCGCGTGCTGGGAAACTACTACTTCTTGCAGTGCTAG

Function

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311217 False 527 TUCP 0.49 4 2966348 2967161
XM_026943635.2 True 1427 mRNA 0.46 10 2965655 2968182

Neighbor

gene id symbol gene type direction distance location
LOC113544739 LOC108276914 coding downstream 2568 2952096 ~ 2963087 (-)
mmp30 LOC108276913 coding downstream 15438 2945584 ~ 2950217 (-)
acat1 acat1,LOC107653722,LOC107565255,LOC107758700,LOC107583377,LOC107679529,LOC107743429 coding downstream 21597 2938480 ~ 2944058 (-)
tmprss2 tmprss2 coding downstream 38760 2920559 ~ 2926895 (-)
dscama dscama,LOC108277288,LOC108433273,LOC107653721,LOC107679528,LOC107758699 coding downstream 63605 2823236 ~ 2902050 (-)
LOC113544715 LOC108276915 coding upstream 6426 2974608 ~ 2977300 (-)
LOC113544865 NA coding upstream 12412 2980594 ~ 2983330 (-)
LOC113544733 mmp13 coding upstream 20530 2988712 ~ 2991334 (-)
acer3 acer3,LOC107680329,LOC107653723,LOC107758701,LOC107743427 coding upstream 35522 3003704 ~ 3013091 (-)
LOC113544923 tsku coding upstream 45725 3013907 ~ 3016173 (-)
G262598 NA non-coding downstream 51784 2913664 ~ 2913871 (-)
G262572 NA non-coding downstream 109988 2855054 ~ 2855667 (-)
LOC113544730 NA non-coding downstream 219124 2737833 ~ 2746531 (-)
G262381 NA non-coding downstream 410474 2532891 ~ 2555181 (-)
G262368 NA non-coding downstream 460847 2504583 ~ 2504808 (-)
G262646 NA non-coding upstream 18273 2986455 ~ 2986675 (-)
G262681 NA non-coding upstream 56679 3024861 ~ 3025212 (-)
G262728 NA non-coding upstream 172845 3141027 ~ 3141668 (-)
G263077 NA non-coding upstream 349895 3318077 ~ 3325821 (-)
G263117 NA non-coding upstream 394188 3362370 ~ 3414133 (-)
si:ch73-1a9.3 NA other downstream 205470 2679675 ~ 2760185 (-)
LOC113544801 LOC108276863,LOC108433269 other downstream 241182 2712442 ~ 2724473 (-)
G261868 LOC108276666,LOC108277182,LOC108277183,LOC108276665,LOC108277185 other downstream 1185248 1775561 ~ 1780407 (-)
nlgn2b nlgn2,LOC108277041,LOC108443341,LOC107678031,LOC107720555,LOC107554306 other downstream 1554716 1265452 ~ 1410939 (-)
lhfpl6 lhfp,LOC103046216,LOC107686123,LOC107691645,LOC107577306,LOC107751385,LOC107746987,LOC107589696,LOC108442104 other downstream 1853262 1015807 ~ 1112393 (-)
akap1a NA other upstream 599237 3567419 ~ 3627300 (-)
G263262 phf12 other upstream 1084807 4052989 ~ 4066383 (-)
npffr1l3 LOC108276623 other upstream 1948308 4916490 ~ 4926650 (-)
git2b git2,LOC108277167,LOC108435150 other upstream 2065686 5033868 ~ 5157309 (-)
tdgf1 LOC108276616,LOC108435131,LOC104953549 other upstream 2278752 5246934 ~ 5251500 (-)

Expression


Co-expression Network