G262663


Basic Information

Item Value
gene id G262663
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3067186 ~ 3068928 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311264
TTATGgtgctttaggctaactgaAGGGTAGTTATGgtgctttaggctaactgaAGGGTAGTTATGgtgctttaggctaactgaAGGGTAGTTATGGTGCTAGGCTAACTGAAGGGTAGTTATGgtgctttaggctaactgaAGGGTAGTTATGgtgctttaggctaactgaagggtaattattgtgctttaggctaactgaAGGGTAGTTATGgtgctttaggctaactgaAGGGTAGTTATGgtgctttaggctaactgaagggtagttattgtgctttaggctaactgaAGGGTAGTTATGgtgctttaggctaactgaagggtaattattgtgctttaggctaactgaagggtagttattgtgctttaggctaactgaagggtaattattgtgctttaggctaactgaagggtagttattgtgctttaggctaactgaagggtagttattgtgctttaggctaactgaagggtagttattgtgctttaggctaactgaagggtaattattgtgctttaggctaactgaagggtagttattgtgctttaggctaactgaagggtagttattgtgctttaggctaactgaagggtaattattgtgctttaggctaactgaagggtaattattgtgctttaggctaactgaAGGGTAGTTATTGTGCTTTAGGCTAACTTTAGCCTTTTAGCTAATCTAGCTAGATCACTTTTTCCACTGTACAACACATCTCTTCCTCAtctctgattattatttttttgtttgttggtgtttgtttagAAGATATCTCTAATTACATTACGTCTCTGATTTGGTTAGCTTTTTAGCTAGTTCATCTGTATAAAAGTGACCATAGCTCAATGTTGACATTTAACACAGTATAAAAGGAACATAAAGTGTTTTTAAcaagtttctgttttttgttgttgttgttttttcacgCCAGACTTTCAGTGTGTAAAGTTTAATGAGctaagtgtgtgcgtgtgtcacTCACACTCCACGTCGTGTAAATACTCGGTAGCTGCCAGCAATTTGTGTCTGTGCTCAGGATCAGTCACATTCAGCTCAATCAAGTGCTGTTCTTTCAGATCCTTCAGATCTTCTACCGTCTGATAACCATTTAGCAACAGGGAGGACATGAACTCCTGCAGGGAAAAGATGGCCAGAAAAGATTTCACACTTTTAGGTCACATCACATCTGACATGTTTTACCTCTTTTGACAGCCATTATCACATACTATGATCTGAAGCTGAAACCCCAGTGAAGCGTAACTTGCcttattaatgatgtttttcGCATTTATACCAGTTATCACTGACATGTTTATCAAAATGCAAATTTTCTGGTTTACAATTCACATCATCTGGTGAAcc

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311264 True 1377 lncRNA 0.39 2 3067186 3068928

Neighbor

gene id symbol gene type direction distance location
gdpd5a LOC108277122,LOC108435822 coding upstream 4379 3030274 ~ 3062807 (+)
igsf5a NA coding upstream 284761 2767552 ~ 2782425 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding upstream 338768 2721350 ~ 2728418 (+)
LOC113544866 glb1l2,LOC108433266 coding upstream 356073 2698244 ~ 2711113 (+)
smtlb sl,LOC108276625 coding upstream 413820 2650654 ~ 2653366 (+)
usp25 usp25,LOC107653727 coding downstream 81538 3150466 ~ 3178938 (+)
LOC113544811 NA coding downstream 249178 3318106 ~ 3325774 (+)
LOC113544950 NA coding downstream 582021 3650949 ~ 3654016 (+)
LOC113544949 LOC108276970 coding downstream 586729 3655657 ~ 3659058 (+)
myo18aa LOC108276885 coding downstream 762431 3831359 ~ 3891808 (+)
G262637 NA non-coding upstream 80511 2986475 ~ 2986675 (+)
G262440 NA non-coding upstream 274778 2756607 ~ 2792408 (+)
G262412 NA non-coding upstream 380712 2684795 ~ 2686474 (+)
G262411 stt3a,LOC107758586 non-coding upstream 385471 2680943 ~ 2681715 (+)
G262408 NA non-coding upstream 393425 2673541 ~ 2673761 (+)
G262741 NA non-coding downstream 120424 3189352 ~ 3194482 (+)
G262737 NA non-coding downstream 121008 3189936 ~ 3238817 (+)
G262747 NA non-coding downstream 165634 3234562 ~ 3267853 (+)
G262757 NA non-coding downstream 256971 3325899 ~ 3328969 (+)
G262762 NA non-coding downstream 314225 3383153 ~ 3407893 (+)
pcp4a NA other upstream 249923 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 319869 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 1647697 1411986 ~ 1419489 (+)
G261503 NA other upstream 1830054 1205991 ~ 1237132 (+)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1954908 1101789 ~ 1112278 (+)
nrip1b LOC108277259 other downstream 47241 3116169 ~ 3141753 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 184388 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 2008925 5077853 ~ 5080643 (+)
G264336 NA other downstream 2939872 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 3100965 6169893 ~ 6194681 (+)

Expression


Co-expression Network