G262741


Basic Information

Item Value
gene id G262741
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3189352 ~ 3194482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311351
tctctctctctctctctctctctctcacacacacacacacactctcacacacacacaggttttgtTATCAGTGAAATGGCACTAAGGAGCTTTCTCCCCCACACAGTCCCTCACCGGGTGAGCCATAAAAGCGATGATGTCATGTCTGAGCCGGAGACTGTGGCCGTTTGCAGTGATCCATTTCTTATTCAGTGCACTTGAATGGCACAAAGCTGAGTGAAAAGGGATTGAGAGAAGGATAGAAACCCCCAAACAAATTTAGCACAGACTGTATCTGCGCAGTTCCCAATCTGGACAggtgtgaatgtaaataaaaggtTAATAATCGTGCGAAGAAAATAGTATTAACTTGCCCGAAGGagacaagattttatttttagcccATCCAAAAAAATTTTTCAGCCGTACCTTTCAAGTATGTGCATGTGCTGTCATGGTGTGACGGCAGTGCCAGAGCTGGGAGAAGACTGGCTGTCTAAGCACAGTGGTATTACTTCCTCCTCATTACTAAGCCCACGGCAGGGGCTCATTGGAAGGGCGCGACACGTCTCCTTGTCTCAGAGCCACGGTCCACTCAAAATGACCGGGCATCTCAGTGCTGTCCCTTTGATGGCCAGGCTGACGGGCGGGGAGGCAGTTTTCATTAGGACGTCTTCCAGGAGGGTGGAGGGGGACGTGGCTGGCGGTCTAAAGAGTATATGAGGAAAGGGGAGTATGCCAGACACAAAAGGCAAAGGCAAATATTTAGTGTGAGACAATGGCAAGGCACCATGGGGTTAACTAGTCCTATTGTCTGCCCGTAATTGGAGGAGCGGTACAAGGAGAAAGTCACCGGTTGGTGCTGTTAGTGATCCAGGCTTTGGAAGTTGGACTGACTCTGAGGAGCTGTAAATTTGTCTCGTCACATGGTTGTCATGTTGCTCTCAATTTGGCTTCAGTAATTTAGGAGAATGATATCACAGTGTAGAAAGTGCAGAAAGCAGACTGCAGACTGCAGTCTTTTGACAGACaaaactattttgtttatttgctagtttattttttatttatttggattaaATCAGTGCAGCTGGATCTCCACTTGTCCTGAGACCAGAATTTATCCTGGGGatatacaaataatgttaacatGTTGATTTTATTGTGATGCTTGATTTAATGCTTGGTTTTTCATAAAGgctgttcatatttatatataaattatagagaatgttttaagttattttgtTTCAGTAGTGCTTCTGATGAACCTCCGagtgcatttcattttaaaatcagtaggtattttgcataaaattataGATTTGCATGATCAAATTATACTAATCACTGCAGCTATGTTCTAATATGGAGACaagtcttaatttttttcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311351 True 1375 lncRNA 0.43 2 3189352 3194482

Neighbor

gene id symbol gene type direction distance location
usp25 usp25,LOC107653727 coding upstream 10414 3150466 ~ 3178938 (+)
gdpd5a LOC108277122,LOC108435822 coding upstream 126545 3030274 ~ 3062807 (+)
igsf5a NA coding upstream 406927 2767552 ~ 2782425 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding upstream 460934 2721350 ~ 2728418 (+)
LOC113544866 glb1l2,LOC108433266 coding upstream 478239 2698244 ~ 2711113 (+)
LOC113544811 NA coding downstream 123624 3318106 ~ 3325774 (+)
LOC113544950 NA coding downstream 456467 3650949 ~ 3654016 (+)
LOC113544949 LOC108276970 coding downstream 461175 3655657 ~ 3659058 (+)
myo18aa LOC108276885 coding downstream 636877 3831359 ~ 3891808 (+)
sez6a LOC108276888,LOC108441783,LOC106603277,LOC105890440,LOC105010768 coding downstream 781198 3975680 ~ 4041056 (+)
G262663 NA non-coding upstream 120424 3067186 ~ 3068928 (+)
G262662 NA non-coding upstream 121622 3066156 ~ 3067730 (+)
G262637 NA non-coding upstream 202677 2986475 ~ 2986675 (+)
G262440 NA non-coding upstream 396944 2756607 ~ 2792408 (+)
G262412 NA non-coding upstream 502878 2684795 ~ 2686474 (+)
G262747 NA non-coding downstream 40080 3234562 ~ 3267853 (+)
G262757 NA non-coding downstream 131417 3325899 ~ 3328969 (+)
G262762 NA non-coding downstream 188671 3383153 ~ 3407893 (+)
G262800 NA non-coding downstream 206383 3400865 ~ 3419792 (+)
G262807 NA non-coding downstream 229562 3424044 ~ 3441594 (+)
nrip1b LOC108277259 other upstream 47599 3116169 ~ 3141753 (+)
pcp4a NA other upstream 372089 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 442035 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 1769863 1411986 ~ 1419489 (+)
G261503 NA other upstream 1952220 1205991 ~ 1237132 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other downstream 58834 3253316 ~ 3576137 (+)
triap1 triap1,LOC106568193 other downstream 1883371 5077853 ~ 5080643 (+)
G264336 NA other downstream 2814318 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 2975411 6169893 ~ 6194681 (+)
G264948 NA other downstream 3872389 7066871 ~ 7082441 (+)

Expression


Co-expression Network