G262807


Basic Information

Item Value
gene id G262807
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3424044 ~ 3441594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311432
GCAAGTTAGTCTTTCCAGATCTCGTCATATTCGTGACACTTTTGAATATTGGCCTGAATATTGGcctgtgtgtttgctgaaaggtcacatgaccagatatATACATTGTCTCAATAATACTGTCAGTATATCCATAAACATTACATCCATAATGTTGGAATTGCCCAAACCTAGAAAGAATCCCTAATCGCAGAGATATACTTTATATTTCTTGTTGTGTAGGTGACGTTATGTAGATGACAGACAGACTCTGCTTTCTGTATTCTCCTGAAACTGTTCAGACTTTTCAAGAATTTTAGACTTCTAGCTTTGAGGCATGTGATTCACAGGCTTGTATTTCCAAGGATTTTGAGTCATAACGACTCTTCACGATAAACTGATTAATTAGCGAAAGTGTTCTGTTTGCACTGAATTATGAGCTCGACATTTAGGTGTTTATGACAGATCTGAGGCTCAGGCTGAGACTCTCTGCCTCAGACTTTTCTGCTTTGTTTCTTTccgtctgtccatctctgtgcACATACAGGGTTAATATCTCTCACGTTAGCTGGATCATTGCAGTAATTTTCAGCCGCCAGCCTCCGTTTCTTGTCCTCAGTCATGGAGGTAATCGCTCTGACAGCTGGTTTGTGAAGACTGGCTCTGTTCCTGCGTATGTATGAGAGAGAATCAGCTTTTGTCCTGTTCCATCATTGACCTGGAAAAGCCAGTGGGCAGGGCCggagatgagagagagggagcgagagcgCCCTGCTAAAACACTCGTGTCGATTTGACCTTTAGTAAGACAGAGCGAATGTGAAAGAAAGTGGCTGGATCTGTTCGGATGTTTCCTCCCATGTGATCAGCGTGATGTGTATCTGACAGGTGCTCATGTTCTCTGCATCACGTGTTTTGGCTGTGTCTTGCTCTCAGCTTAAGCAAATGAGTATTTCACAAATCAAATCAGGAGCATTTACTGAGATTAGCGAATGCGTTTTACAGATTATAAAGCATAGGTTTTTCTAAATATTAGCTCTGGACTACAGCAGATAAACATATGCTATCATTTTGACAGTAACCTAACATTATCATCTGCTtatcaaataaatttaaatacaaacataaaaaaaaaaagtaagtaaacaGTGGCATCACAAAGTTGTATGGTGTAAGCAAGGCTAAAGTGCTACATGAGTGAAGTCAttagcactttttttaaatgaaatatgttgaacattatttagattttgtaaaatttgttttgtttggattATAAACCAGCGCTCTGTTAAGGTAAGTTAAGTTGGTTGTACGATTAACATCAGGCCCACAGATTTCAAACAAGACCTTTTGTCCAATCATACTGATTTGTTATTCAGTCTCTAAACCAATCAGAGCGTGTGACCAAAAGATAGGGGTAGGCATAGGATTAATTAGCTACCGTAATCATTATGCCACTTGAAGGTCTTCACAAGGataggaaaatgtgtgtgtgtgtgagtgagagtgagtgagtgactgtgtgcttgtgtgttccTTGTTGCACATGTGTGGATGCCAAGGAAGCACAGAGttgagatcacacacacacacacacacacacacagtctgtgtgtttctgctggGGTGTCTCCTGCAGCTGCTCCTGAGAGGGGATTTTAGCAAAATTCGTTCTGTTccaaagtacacacacacacacacacacacacacacacactcatttcccTTATCACACCTGATTCCATCTGACAAAAGcctttattttcttaatatttttgtatCCGTCGAAGCCGACTGAAGTCTATATTCTCCCCATCTGTCACATCTGttcctttctctcctctccttgCCTTTtgcgatacacacacacacacacacacacacacacacgcaggcaggcaggcagcgTTCTGGCTCACAAGAGTTTTAATTCTGCTCTGGCGCCACGGAAACCGCTCCATAACCAATCAAAAGGGCTTTTTAATGGAACCCCTGGAGAGCGGGACACACAGCAGCGTCATGGCTAACCTTTCAATGTTCTCTGTGACTCAGAGGagccagcacaacacacacacacacacacacaaacatcctcCAACACCAAAGCCTATTCTGGATCTATATCAGTGATAGAGGTTCTAAAACCACTCATTGATCCTTTTGCTCTTAATCCCGTCTCCTGGGATGCTATGTGTCTGAGTTTTGTGGTTCCTGTTGACATTGTGtatatgtactgtgtgtgtgtgcgcgttggTTTGGGCGGGCCGTTGATGCAGTGAGGAGCTAATCTCCATTAGCTTGAACAGACCGCTTCATTAACCAAGCCGACCTCTGTGCCTCTTCTCGGCTCCCTTgctagtctctctctcacacacatatatacacacatacacacacacacctgacagaTTGTCAGTGATGTCACATCCAATCTTGTCTCTGTTCTGATGCAAAGGtcctcttctgtctgtctctgctgtCCACTTTCCACAAGAGAAACTTAAAATCTCACTGTTAGAGATTGTTTTaagcattgattttttttttctaattaggTTTATGTTGGTCTTGTGGACAAAACATGCAGGACGAAGTGCAATTATCTTTTTGAGTCTGAACCAATCTCCAGACGGGGCTGAATCAATGGTCACAAGTTTCCATCCTGCTTTAATCTGATTCAGACCCTGTTGAAAGTCAGGTCCATGGGAACCAAATACTCCCAGAAACTCAAAGGTGGGAAAGAAAGAAGTGGGGACATCAGATTGGCTGCTTCCTTTATTTTTAGATTGATCcactttgttttgaaaacgGTGTAAagagttttgtatttttgtgagTCAGAGCTGTAACGGCAGCTTTGCAGTGATTAACTGGCCCtgtaataagtaaggaataaagcacaatgggccatgctgttataggaatataatccaGGCTGTTTCCACTCCAGAgaggattattttcctctaacagcaagGCCTGAAATCTTTcttcttatagcacagcaagtTGCCAACGATGACcagatttaatttattaatgaacatcacGTTGtggtttttaaccatttaaatgTTGTGAACAATGACaagacaagttatttcctCtaatctttctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311432 True 3100 lncRNA 0.42 2 3424044 3441594

Neighbor

gene id symbol gene type direction distance location
LOC113544811 NA coding upstream 98270 3318106 ~ 3325774 (+)
usp25 usp25,LOC107653727 coding upstream 245106 3150466 ~ 3178938 (+)
gdpd5a LOC108277122,LOC108435822 coding upstream 361237 3030274 ~ 3062807 (+)
igsf5a NA coding upstream 641619 2767552 ~ 2782425 (+)
slc37a4b slc37a4,LOC108276867,LOC107653717,LOC107743433,LOC107679531,LOC107565261,LOC107758618 coding upstream 695626 2721350 ~ 2728418 (+)
LOC113544950 NA coding downstream 209355 3650949 ~ 3654016 (+)
LOC113544949 LOC108276970 coding downstream 214063 3655657 ~ 3659058 (+)
myo18aa LOC108276885 coding downstream 389765 3831359 ~ 3891808 (+)
sez6a LOC108276888,LOC108441783,LOC106603277,LOC105890440,LOC105010768 coding downstream 534086 3975680 ~ 4041056 (+)
phf12a phf12 coding downstream 604683 4046277 ~ 4059813 (+)
G262800 NA non-coding upstream 4252 3400865 ~ 3419792 (+)
G262762 NA non-coding upstream 16151 3383153 ~ 3407893 (+)
G262757 NA non-coding upstream 95075 3325899 ~ 3328969 (+)
G262747 NA non-coding upstream 156191 3234562 ~ 3267853 (+)
G262737 NA non-coding upstream 185227 3189936 ~ 3238817 (+)
G262852 NA non-coding downstream 181213 3622807 ~ 3623372 (+)
LOC113544951 LOC108276969 non-coding downstream 190667 3632261 ~ 3636665 (+)
G262872 NA non-coding downstream 223930 3665524 ~ 3667443 (+)
G262894 NA non-coding downstream 253457 3695051 ~ 3699577 (+)
G262946 NA non-coding downstream 348547 3790141 ~ 3792507 (+)
nrip1b LOC108277259 other upstream 282291 3116169 ~ 3141753 (+)
pcp4a NA other upstream 606781 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 676727 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 2004555 1411986 ~ 1419489 (+)
G261503 NA other upstream 2186912 1205991 ~ 1237132 (+)
triap1 triap1,LOC106568193 other downstream 1636259 5077853 ~ 5080643 (+)
G264336 NA other downstream 2567206 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 2728299 6169893 ~ 6194681 (+)
G264948 NA other downstream 3625277 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 3674457 7116051 ~ 7126246 (+)

Expression


Co-expression Network