G262894


Basic Information

Item Value
gene id G262894
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 3695051 ~ 3699577 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU311526
ATTGTTCACGTTCTTCAGTATGTTGGTGAGGCCGCTGATGACCAGCGAGAACTTGTACTTGGAGATGTTGATCAGACATTCTCTGTTGTGCTCCGTGCTGACTTTGGTATGCGTGTTCTGTTGCCCGACtttgactggaacctgCTCGTCGAATCTGTTAATGACGGCCTGAACCCATTCAGCGGGTTTGTGAGCCGCCATGACCCGCACAAAAAACGCCTTTCCTGCGCTTTCCAACTCCTTAATCCTCAAAGTCTGTGTTCAGGGCCCGCATGGAGGAGGCCTGGCTTgatattttctccttttttccatATCAGAAGCAGCACAGTGCCGCCATGACGGTGGCGGAAGTTTGAGTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU311526 True 361 lncRNA 0.51 2 3695051 3699577

Neighbor

gene id symbol gene type direction distance location
LOC113544949 LOC108276970 coding upstream 35993 3655657 ~ 3659058 (+)
LOC113544950 NA coding upstream 41035 3650949 ~ 3654016 (+)
LOC113544811 NA coding upstream 369277 3318106 ~ 3325774 (+)
usp25 usp25,LOC107653727 coding upstream 516113 3150466 ~ 3178938 (+)
gdpd5a LOC108277122,LOC108435822 coding upstream 632244 3030274 ~ 3062807 (+)
myo18aa LOC108276885 coding downstream 131782 3831359 ~ 3891808 (+)
sez6a LOC108276888,LOC108441783,LOC106603277,LOC105890440,LOC105010768 coding downstream 276103 3975680 ~ 4041056 (+)
phf12a phf12 coding downstream 346700 4046277 ~ 4059813 (+)
LOC113544790 LOC108276818,LOC108433289,LOC107743482 coding downstream 366315 4065892 ~ 4068409 (+)
plekhb1 plekhb1 coding downstream 410031 4109608 ~ 4120030 (+)
G262872 NA non-coding upstream 27608 3665524 ~ 3667443 (+)
LOC113544951 LOC108276969 non-coding upstream 58386 3632261 ~ 3636665 (+)
G262852 NA non-coding upstream 71679 3622807 ~ 3623372 (+)
G262807 NA non-coding upstream 253457 3424044 ~ 3441594 (+)
G262800 NA non-coding upstream 275259 3400865 ~ 3419792 (+)
G262946 NA non-coding downstream 90564 3790141 ~ 3792507 (+)
G263025 NA non-coding downstream 486182 4185759 ~ 4186254 (+)
G263439 NA non-coding downstream 586400 4285977 ~ 4286206 (+)
G263566 NA non-coding downstream 798622 4498199 ~ 4499244 (+)
G263612 NA non-coding downstream 918489 4618066 ~ 4621490 (+)
msi2a msi2b,LOC108276910,LOC108435815,LOC108425902 other upstream 118914 3253316 ~ 3576137 (+)
nrip1b LOC108277259 other upstream 553298 3116169 ~ 3141753 (+)
pcp4a NA other upstream 877788 2795491 ~ 2817263 (+)
rps25 rps25,LOC107583381,LOC107565279,LOC108433270,LOC107758587,LOC107679519 other upstream 947734 2744396 ~ 2747317 (+)
ponzr2 LOC108277330 other upstream 2275562 1411986 ~ 1419489 (+)
triap1 triap1,LOC106568193 other downstream 1378276 5077853 ~ 5080643 (+)
G264336 NA other downstream 2309223 6008800 ~ 6011902 (+)
LOC113544903 mphosph9 other downstream 2470316 6169893 ~ 6194681 (+)
G264948 NA other downstream 3367294 7066871 ~ 7082441 (+)
ddx55 ddx55,LOC107704124,LOC107665764 other downstream 3416474 7116051 ~ 7126246 (+)

Expression


Co-expression Network